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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24145 and RR42_RS24150 are separated by 14 nucleotides
RR42_RS24150 and RR42_RS24155 are separated by 35 nucleotides
RR42_RS24155 and RR42_RS24160 are separated by 68 nucleotides
RR42_RS24160 and RR42_RS24165 are separated by 60 nucleotides
RR42_RS24145: RR42_RS24145 - hypothetical protein, at 743,257 to 744,894
_RS24145
RR42_RS24150: RR42_RS24150 - thioesterase, at 744,909 to 745,316
_RS24150
RR42_RS24155: RR42_RS24155 - monooxygenase, at 745,352 to 746,494
_RS24155
RR42_RS24160: RR42_RS24160 - hypothetical protein, at 746,563 to 747,075
_RS24160
RR42_RS24165: RR42_RS24165 - gentisate 1,2-dioxygenase, at 747,136 to 748,164
_RS24165
Group
Condition
RR42
_RS24145
RR42
_RS24150
RR42
_RS24155
RR42
_RS24160
RR42
_RS24165
lb
LB
-0.2
-0.1
-0.3
+0.2
-0.5
carbon source
Carbon source D,L-Lactate 10 mM
-0.1
-0.3
-0.3
-0.2
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
-0.1
+0.2
-0.6
+0.1
carbon source
Suberic (C)
-0.2
+0.2
-0.2
-0.2
+0.2
carbon source
L-Leucine (C)
+0.1
-0.3
-0.3
+0.3
-0.0
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.0
-0.4
-0.2
+0.3
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
-0.3
-0.1
+0.6
-0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.5
-0.1
+0.3
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.1
-0.2
-0.1
-0.3
carbon source
L-Threonine (C)
+0.1
+0.2
-0.1
-0.5
+0.2
stress
R2A with Cephalothin 0.25 mg/ml
-0.2
+0.1
+0.4
-0.3
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.2
-0.3
+0.3
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.4
+0.2
-0.0
+0.2
+0.2
nitrogen source
Glucuronamide (N)
+0.2
+0.1
+0.1
-0.4
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
+0.1
-0.2
-0.2
+0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
-0.4
+0.1
+0.3
+0.2
carbon source
succinate (C)
+0.0
+0.2
+0.2
-0.3
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.1
-0.1
-0.2
+0.5
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.3
+0.9
-0.5
+0.2
carbon source
D-Lactate (C)
-0.0
+0.4
+0.2
-0.4
+0.2
r2a
R2A
-0.1
-0.1
+0.3
+0.4
-0.0
stress
R2A with Chloride 300 mM
+0.1
+0.2
+0.1
-0.2
+0.3
carbon source
L-Lactate (C)
-0.2
+0.2
+0.3
+0.1
+0.2
carbon source
Protocatechuic Acid (C)
+0.1
+0.1
-0.2
+0.5
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.7
-0.2
+0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-0.3
+0.8
+0.1
+0.2
carbon source
L-Proline (C)
+0.1
+0.3
+0.2
+0.4
-0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
+0.4
+0.2
-0.2
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.0
+0.3
+0.3
+0.4
-0.0
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.2
+0.2
+0.6
+0.2
+0.2
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