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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS24085 and RR42_RS24090 are separated by 111 nucleotides
RR42_RS24090 and RR42_RS24095 are separated by 76 nucleotides
RR42_RS24095 and RR42_RS24100 are separated by 115 nucleotides
RR42_RS24100 and RR42_RS24105 are separated by 384 nucleotides
RR42_RS24085: RR42_RS24085 - hypothetical protein, at 728,407 to 729,375
_RS24085
RR42_RS24090: RR42_RS24090 - quinone oxidoreductase, at 729,487 to 730,479
_RS24090
RR42_RS24095: RR42_RS24095 - hypothetical protein, at 730,556 to 730,885
_RS24095
RR42_RS24100: RR42_RS24100 - hypothetical protein, at 731,001 to 731,516
_RS24100
RR42_RS24105: RR42_RS24105 - membrane protein, at 731,901 to 733,004
_RS24105
Group
Condition
RR42
_RS24085
RR42
_RS24090
RR42
_RS24095
RR42
_RS24100
RR42
_RS24105
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.2
-0.4
+0.0
+0.1
-0.4
carbon source
Azelaic (C)
+0.1
-0.1
-0.0
-0.6
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.2
-0.6
-0.2
-0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
-0.1
-0.4
+0.1
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.0
-0.5
-0.0
+0.1
carbon source
Trisodium citrate (C)
-0.1
-0.2
-0.3
+0.2
+0.0
carbon source
Dodecandioic (C)
-0.2
-0.1
+0.3
-0.6
+0.1
carbon source
Octanoic (C)
-0.0
-0.2
-0.2
+0.2
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.2
+0.0
-0.5
-0.0
+0.2
carbon source
L-Lactate (C)
-0.1
-0.1
-0.2
+0.4
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
+0.0
-0.6
+0.3
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.2
-0.1
-0.4
+0.1
+0.1
carbon source
Protocatechuic Acid (C)
+0.2
-0.3
+0.1
-0.2
+0.1
carbon source
Suberic (C)
-0.1
+0.0
+0.3
-0.4
+0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.2
+0.0
-0.4
-0.0
carbon source
Carbon source D,L-Lactate 10 mM
-0.3
-0.1
+0.2
+0.2
+0.0
carbon source
L-Threonine (C)
-0.2
+0.0
-0.1
+0.4
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
+0.2
-0.2
+0.3
-0.1
nitrogen source
casaminos (N)
+0.2
-0.2
-0.2
+0.2
+0.1
nitrogen source
L-Tryptophan (N)
-0.2
+0.1
+0.3
-0.0
+0.1
stress
R2A with Cobalt chloride 0.3 mM
-0.0
+0.1
-0.3
+0.4
+0.1
nitrogen source
D-Alanine (N)
-0.1
+0.1
-0.1
+0.2
+0.2
carbon source
L-Leucine (C)
-0.2
-0.1
+0.2
+0.2
+0.0
carbon source
Disodium Glutarate (C)
+0.3
-0.2
+0.3
-0.0
+0.0
carbon source
Suberic (C)
+0.3
-0.2
+0.3
-0.2
+0.1
nitrogen source
L-Serine (N)
+0.2
-0.2
+0.1
+0.2
+0.1
carbon source
L-Histidine (C)
+0.0
+0.2
-0.1
+0.4
+0.0
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.0
+0.3
+0.1
+0.4
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.2
+0.2
+0.2
+0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
+0.1
-0.0
+0.2
+0.1
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