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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23760 and RR42_RS23765 are separated by 4 nucleotides
RR42_RS23765 and RR42_RS23770 are separated by 104 nucleotides
RR42_RS23770 and RR42_RS23775 are separated by 647 nucleotides
RR42_RS23775 and RR42_RS23780 overlap by 4 nucleotides
RR42_RS23760: RR42_RS23760 - tRNA-Asn, at 655,749 to 655,824
_RS23760
RR42_RS23765: RR42_RS23765 - tRNA-Gly, at 655,829 to 655,904
_RS23765
RR42_RS23770: RR42_RS23770 - hypothetical protein, at 656,009 to 656,920
_RS23770
RR42_RS23775: RR42_RS23775 - hypothetical protein, at 657,568 to 658,818
_RS23775
RR42_RS23780: RR42_RS23780 - hypothetical protein, at 658,815 to 659,753
_RS23780
Group
Condition
RR42
_RS23760
RR42
_RS23765
RR42
_RS23770
RR42
_RS23775
RR42
_RS23780
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.8
-0.7
+0.0
-0.2
+0.0
carbon source
pyruvate (C)
-0.7
-0.3
-0.3
-0.1
-0.2
stress
R2A with Sisomicin 0.035 mg/ml
-0.4
-0.7
-0.0
+0.0
-0.4
stress
R2A with nitrate 200 mM
-0.7
-0.1
-0.3
+0.0
-0.1
carbon source
Valeric (C)
-0.3
-0.8
-0.0
+0.2
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.9
-0.2
-0.0
+0.2
-0.1
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.7
-0.7
-0.1
+0.1
+0.3
carbon source
Suberic (C)
-0.8
-0.2
+0.1
+0.1
-0.0
carbon source
pyruvate (C)
-1.1
+0.2
+0.2
-0.1
-0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-0.4
-0.6
+0.1
-0.0
+0.2
stress
R2A with Lomefloxacin 0.00075 mM
-1.0
+0.2
-0.0
-0.1
+0.1
stress
R2A with Cephalothin 0.25 mg/ml
-1.1
+0.7
-0.2
-0.1
+0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.7
+0.0
-0.6
+0.8
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.8
+0.3
+0.3
-0.2
-0.1
nitrogen source
Glucuronamide (N)
-0.4
+0.6
-0.1
-0.2
-0.3
nitrogen source
D-Alanine (N)
-0.2
-0.3
-0.2
+0.3
+0.3
stress
R2A with Chlorite 4 mM
+0.1
+0.5
-0.2
-0.1
-0.2
stress
R2A with nitrate 200 mM
+0.5
-0.8
+0.2
+0.0
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.6
-0.7
+0.1
+0.1
+0.2
carbon source
Protocatechuic Acid (C)
-0.8
+0.4
+0.4
+0.3
+0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+1.0
-0.4
-0.3
+0.0
+0.0
stress
R2A with sodium fluoride 100 mM
+0.8
-0.3
+0.1
-0.1
-0.0
stress
R2A with Cobalt chloride 0.3 mM
-0.0
-0.8
+0.2
+0.7
+0.4
carbon source
L-Asparagine (C)
+0.4
+0.5
-0.2
-0.1
+0.1
carbon source
Octanoic (C)
+0.9
-0.0
+0.1
-0.2
-0.1
nitrogen source
D-Alanine (N)
-0.3
+0.7
-0.0
+0.3
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+1.1
-0.1
-0.0
-0.1
-0.0
carbon source
L-Glutamine (C)
+1.2
-0.1
-0.2
+0.0
+0.0
nitrogen source
L-Glutamine (N)
+0.3
+1.0
-0.1
-0.2
-0.0
stress
R2A with copper (II) chloride 0.25 mM
+0.8
+0.3
+0.2
-0.1
-0.0
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RR42_RS23770
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RR42_RS23780
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