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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23700 and RR42_RS23705 are separated by 51 nucleotides
RR42_RS23705 and RR42_RS23710 are separated by 40 nucleotides
RR42_RS23710 and RR42_RS23715 are separated by 216 nucleotides
RR42_RS23715 and RR42_RS23720 are separated by 206 nucleotides
RR42_RS23700: RR42_RS23700 - acyl-CoA dehydrogenase, at 643,022 to 644,173
_RS23700
RR42_RS23705: RR42_RS23705 - cyclohexanecarboxylate--CoA ligase, at 644,225 to 645,877
_RS23705
RR42_RS23710: RR42_RS23710 - enoyl-CoA hydratase, at 645,918 to 646,667
_RS23710
RR42_RS23715: RR42_RS23715 - amino acid ABC transporter permease, at 646,884 to 647,207
_RS23715
RR42_RS23720: RR42_RS23720 - hypothetical protein, at 647,414 to 648,286
_RS23720
Group
Condition
RR42
_RS23700
RR42
_RS23705
RR42
_RS23710
RR42
_RS23715
RR42
_RS23720
nitrogen source
casaminos (N)
-0.5
-0.4
-0.6
-0.6
-0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.5
-0.4
-0.5
-0.3
-0.5
nitrogen source
Glucuronamide (N)
-0.3
-0.8
-0.2
-0.2
-0.4
stress
R2A with nitrate 200 mM
-0.2
-0.3
-0.5
-0.6
-0.1
r2a
R2A
-0.3
-0.4
-0.5
-0.1
-0.2
stress
R2A with Cephalothin 0.25 mg/ml
-0.4
-0.4
-0.2
-0.4
-0.1
temperature
R2A 23C
-0.4
-0.3
-0.2
-0.3
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
-0.0
-0.0
-0.7
-0.4
carbon source
Valeric (C)
-0.4
-0.1
-0.1
-0.4
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
-0.2
-0.4
-0.2
-0.2
r2a
R2A
-0.3
-0.4
-0.3
-0.1
-0.2
temperature
R2A 23C
-0.4
-0.3
-0.2
-0.2
-0.2
carbon source
Pimelic (C)
-0.1
-0.2
-0.2
-0.5
-0.2
nitrogen source
L-Serine (N)
-0.4
-0.4
-0.1
+0.0
-0.3
nitrogen source
L-Isoleucine (N)
-0.3
-0.6
-0.0
+0.0
-0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.4
+0.1
+0.0
-0.3
-0.5
carbon source
adipate (C)
-0.2
-0.2
+0.1
-0.7
-0.1
carbon source
Heptanoic (C)
-0.1
-0.4
+0.2
-0.3
-0.3
carbon source
L-Alanine (C)
-0.1
-0.1
-0.4
+0.1
-0.4
nitrogen source
L-Valine (N)
-0.4
-0.3
+0.1
+0.1
-0.3
nitrogen source
L-Leucine (N)
-0.3
+0.2
-0.2
-0.2
-0.2
nitrogen source
L-Glutamine (N)
-0.3
-0.3
+0.2
-0.3
+0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-0.4
-0.2
-0.2
-0.2
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.0
-0.3
-0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
+0.2
-0.7
+0.3
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.6
-0.3
+0.3
+0.1
stress
R2A with nitrate 150 mM
+0.2
+0.1
-0.2
+0.4
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+0.1
+0.3
+0.0
+0.3
+0.6
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
+0.3
+0.3
+0.7
+0.0
stress
R2A with Nickel (II) chloride 0.25 mM
+0.4
+0.4
+0.1
+0.4
+0.3
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