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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23680 and RR42_RS23685 are separated by 74 nucleotides
RR42_RS23685 and RR42_RS23690 are separated by 132 nucleotides
RR42_RS23690 and RR42_RS23695 are separated by 85 nucleotides
RR42_RS23695 and RR42_RS23700 are separated by 99 nucleotides
RR42_RS23680: RR42_RS23680 - LacI family transcriptional regulator, at 639,548 to 640,558
_RS23680
RR42_RS23685: RR42_RS23685 - transcriptional regulator, at 640,633 to 641,154
_RS23685
RR42_RS23690: RR42_RS23690 - 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase, at 641,287 to 642,054
_RS23690
RR42_RS23695: RR42_RS23695 - dihydroxynaphthoic acid synthetase, at 642,140 to 642,922
_RS23695
RR42_RS23700: RR42_RS23700 - acyl-CoA dehydrogenase, at 643,022 to 644,173
_RS23700
Group
Condition
RR42
_RS23680
RR42
_RS23685
RR42
_RS23690
RR42
_RS23695
RR42
_RS23700
lb
LB
-0.2
-1.5
-4.2
+0.0
+0.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.7
-0.8
-0.6
-0.4
-0.5
nitrogen source
casaminos (N)
-0.6
-0.9
+0.0
-0.6
-0.5
nitrogen source
L-Serine (N)
-0.3
-1.0
-0.4
-0.3
-0.4
stress
R2A with Cephalothin 0.25 mg/ml
-0.5
-0.6
-0.5
-0.4
-0.4
nitrogen source
L-Glutamine (N)
-0.5
-0.9
-0.6
-0.2
-0.3
carbon source
Disodium Glutarate (C)
+0.0
-1.9
-0.1
-0.2
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-1.5
-0.6
-0.0
-0.1
r2a
R2A
-0.5
-0.6
-0.4
-0.4
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
-1.7
-0.2
-0.1
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.0
-1.5
-0.0
-0.2
-0.4
nitrogen source
L-Citrulline (N)
-0.2
-0.5
-0.8
-0.2
-0.3
carbon source
Protocatechuic Acid (C)
+0.1
-1.9
+0.4
-0.3
-0.3
nitrogen source
Glucuronamide (N)
-0.4
-0.9
+0.2
-0.7
-0.3
carbon source
adipate (C)
-0.0
-1.6
+0.0
-0.2
-0.2
temperature
R2A 23C
-0.2
-0.6
-0.3
-0.4
-0.4
carbon source
Disodium Glutarate (C)
+0.3
-2.0
+0.2
-0.0
-0.3
carbon source
L-Proline (C)
-0.1
-1.6
+0.3
-0.0
-0.3
nitrogen source
nitrite (N)
+0.2
-1.3
-0.4
-0.1
-0.1
carbon source
Pimelic (C)
+0.0
-1.8
+0.2
-0.0
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.3
-1.1
-0.3
-0.0
carbon source
Pimelic (C)
+0.1
-1.9
+0.3
+0.1
-0.1
carbon source
Protocatechuic Acid (C)
-0.4
-1.6
+0.5
+0.2
-0.1
carbon source
adipate (C)
+0.0
-1.3
+0.3
-0.0
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-1.2
+0.6
+0.1
+0.0
carbon source
D,L-Lactate (C)
-0.7
-0.6
+0.8
-0.1
-0.1
carbon source
Dodecandioic (C)
+0.1
-0.9
+0.6
-0.1
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-1.4
+0.7
+0.1
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-1.1
+0.6
-0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
-1.0
+0.8
+0.1
+0.0
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