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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23555 and RR42_RS23560 overlap by 8 nucleotides
RR42_RS23560 and RR42_RS23565 overlap by 14 nucleotides
RR42_RS23565 and RR42_RS23570 overlap by 11 nucleotides
RR42_RS23570 and RR42_RS23575 are separated by 510 nucleotides
RR42_RS23555: RR42_RS23555 - ATP synthase, at 610,069 to 611,532
_RS23555
RR42_RS23560: RR42_RS23560 - flagellar assembly protein FliH, at 611,525 to 612,382
_RS23560
RR42_RS23565: RR42_RS23565 - flagellar motor switch protein G, at 612,369 to 613,361
_RS23565
RR42_RS23570: RR42_RS23570 - flagellar M-ring protein FliF, at 613,351 to 615,060
_RS23570
RR42_RS23575: RR42_RS23575 - flagellar hook-basal body protein FliE, at 615,571 to 615,891
_RS23575
Group
Condition
RR42
_RS23555
RR42
_RS23560
RR42
_RS23565
RR42
_RS23570
RR42
_RS23575
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
-0.3
-3.5
-0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
+0.6
-3.4
+0.0
+0.4
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
+0.3
-2.0
-0.3
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
+0.4
-1.9
-0.4
-0.1
carbon source
Ethanol (C)
+0.5
-0.3
-2.1
-0.1
-0.3
nitrogen source
L-Serine (N)
-0.4
-0.6
-0.3
+0.1
-0.9
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.2
-1.9
+0.1
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.5
+0.1
-0.9
-0.2
-0.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.7
-0.3
+0.1
-0.0
-1.1
carbon source
L-Histidine (C)
-0.4
-0.4
-0.9
-0.0
-0.2
nitrogen source
L-Glutamine (N)
-0.6
-0.1
+1.0
-0.6
-1.6
carbon source
L-Alanine (C)
-0.3
+0.0
-1.0
-0.3
-0.4
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.3
-0.4
-1.5
+0.2
-0.5
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.1
+0.5
-1.1
-0.5
-0.0
nitrogen source
casaminos (N)
-0.5
-0.5
+0.5
-0.3
-0.4
stress
R2A with Chlorite 4 mM
-0.3
+0.3
-1.1
+0.1
-0.2
stress
R2A with A22 0.01 mg/ml
+0.0
-0.2
-1.8
+0.2
+0.5
carbon source
L-Threonine (C)
-0.1
+0.4
-1.1
+0.1
-0.5
stress
R2A with Lomefloxacin 0.00075 mM
-0.5
+0.4
+0.8
-0.0
-0.3
lb
LB
+0.1
+0.3
-1.1
+0.4
+0.8
carbon source
Protocatechuic Acid (C)
-0.1
-0.4
+1.3
+0.0
-0.2
carbon source
Dodecandioic (C)
-0.2
+0.2
+1.4
+0.1
-0.6
carbon source
adipate (C)
+0.3
-0.4
+1.0
-0.3
+0.3
carbon source
Azelaic (C)
+0.1
+0.3
+1.2
+0.0
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
+0.4
+1.3
-0.2
-0.4
carbon source
Pimelic (C)
+0.0
+0.0
+1.6
-0.3
-0.1
carbon source
succinate (C)
-0.3
-0.1
+2.1
-0.2
-0.1
carbon source
Heptanoic (C)
+0.2
-0.2
+1.6
-0.2
-0.0
carbon source
Valeric (C)
+0.4
+0.1
+1.8
-0.0
-0.4
carbon source
Valeric (C)
+0.3
+0.2
+1.7
+0.0
+0.1
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