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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23440 and RR42_RS23445 are separated by 281 nucleotides
RR42_RS23445 and RR42_RS23450 are separated by 32 nucleotides
RR42_RS23450 and RR42_RS23455 are separated by 3 nucleotides
RR42_RS23455 and RR42_RS23460 overlap by 62 nucleotides
RR42_RS23440: RR42_RS23440 - hypothetical protein, at 585,177 to 586,136
_RS23440
RR42_RS23445: RR42_RS23445 - LacI family transcriptional regulator, at 586,418 to 587,410
_RS23445
RR42_RS23450: RR42_RS23450 - enoyl-CoA hydratase, at 587,443 to 588,237
_RS23450
RR42_RS23455: RR42_RS23455 - 6-carboxyhexanoate--CoA ligase, at 588,241 to 590,331
_RS23455
RR42_RS23460: RR42_RS23460 - alpha/beta hydrolase, at 590,270 to 590,644
_RS23460
Group
Condition
RR42
_RS23440
RR42
_RS23445
RR42
_RS23450
RR42
_RS23455
RR42
_RS23460
carbon source
Protocatechuic Acid (C)
-0.2
+0.1
-0.1
-0.7
-2.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.8
-0.1
+0.1
-0.6
stress
R2A with Cobalt chloride 0.5 mM
-0.4
-0.2
+0.1
+0.4
-1.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.1
-0.3
+0.8
-2.0
r2a
R2A
-0.2
-0.2
+0.2
+0.2
-0.8
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
+0.4
+0.0
+0.2
-1.0
carbon source
Protocatechuic Acid (C)
-0.1
-0.7
-0.1
-0.1
+0.5
nitrogen source
L-Glutamine (N)
+0.2
+0.1
+0.2
-0.2
-0.6
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.6
+0.4
-0.1
+0.3
carbon source
adipate (C)
-0.3
+0.2
-0.3
-0.4
+0.8
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.0
+0.1
-0.5
+0.7
lb
LB
-0.3
-0.5
+0.1
+0.1
+0.5
temperature
R2A 23C
+0.1
-0.5
-0.2
-0.0
+0.7
temperature
R2A 23C
+0.1
-0.6
+0.2
-0.1
+0.4
carbon source
D,L-Lactate (C)
-0.1
+0.3
-0.6
+0.0
+0.7
stress
R2A with Zinc 0.1 mM
-0.0
-0.0
-0.6
+0.4
+0.6
stress
R2A with Bacitracin 0.5 mg/ml
-0.1
+0.2
+0.2
+0.5
-0.4
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.4
+0.2
-0.1
+0.9
carbon source
Valeric (C)
-0.2
+0.0
+0.3
-0.3
+0.8
stress
R2A with nitrate 150 mM
-0.2
-0.2
+0.3
-0.1
+0.7
carbon source
Suberic (C)
-0.1
+0.5
+0.3
-0.2
+0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.2
-0.5
+0.4
+0.6
+0.5
carbon source
Ethanol (C)
+0.1
+0.2
-0.3
-0.0
+0.8
temperature
R2A 37C
+0.0
-0.3
+0.3
+0.0
+0.7
carbon source
Heptanoic (C)
+0.1
-0.2
+0.1
+0.2
+0.9
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.3
+0.3
+0.9
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
+0.4
+0.5
+0.5
-0.6
nitrogen source
casaminos (N)
+0.2
+0.5
+0.4
-0.2
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.6
+0.3
+0.4
+0.4
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
+0.2
+0.0
+0.3
+0.6
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