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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23360 and RR42_RS23365 overlap by 4 nucleotides
RR42_RS23365 and RR42_RS23370 are separated by 44 nucleotides
RR42_RS23370 and RR42_RS23375 overlap by 8 nucleotides
RR42_RS23375 and RR42_RS23380 are separated by 150 nucleotides
RR42_RS23360: RR42_RS23360 - flagellar biosynthesis protein flip, at 570,733 to 571,575
_RS23360
RR42_RS23365: RR42_RS23365 - flagellar biosynthesis protein FliO, at 571,572 to 572,042
_RS23365
RR42_RS23370: RR42_RS23370 - flagellar motor switch protein FliN, at 572,087 to 572,545
_RS23370
RR42_RS23375: RR42_RS23375 - flagellar motor switch protein FliM, at 572,538 to 573,545
_RS23375
RR42_RS23380: RR42_RS23380 - flagellar basal body protein FliL, at 573,696 to 574,181
_RS23380
Group
Condition
RR42
_RS23360
RR42
_RS23365
RR42
_RS23370
RR42
_RS23375
RR42
_RS23380
stress
R2A with Lomefloxacin 0.001 mM
-0.5
+1.0
-0.2
-0.3
-2.3
nitrogen source
nitrite (N)
-0.2
-1.1
+0.1
-0.3
-0.7
lb
LB
-0.5
-1.7
+1.2
-0.4
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
-0.2
+0.2
-0.1
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.1
-0.5
-0.0
-1.2
carbon source
L-Phenylalanine (C)
+0.3
-0.8
-0.9
-0.0
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
-0.7
+0.7
+0.3
-0.8
carbon source
Heptanoic (C)
+0.4
+0.0
-1.0
-0.0
-0.4
nitrogen source
L-Tryptophan (N)
+0.5
-0.2
-0.5
-0.1
-0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
-0.6
-0.7
+0.1
-0.1
carbon source
Protocatechuic Acid (C)
-0.3
+0.1
-1.1
+0.4
+0.0
carbon source
L-Leucine (C)
+0.2
+0.3
-0.4
+0.3
-0.8
carbon source
Azelaic (C)
-0.6
+0.7
-0.2
-0.1
+0.2
carbon source
a-Ketoglutaric (C)
+0.4
-0.2
+0.4
+0.4
-1.1
carbon source
Azelaic (C)
-1.1
+0.4
+0.3
-0.1
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
+0.6
-0.4
-0.2
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
-0.0
+0.5
+0.3
+0.4
-1.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.2
+0.3
+0.7
-0.0
-0.8
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
-0.3
+0.4
+0.2
-0.5
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
-0.0
+0.8
+0.7
-1.1
carbon source
D,L-Lactate (C)
+0.4
+0.3
+0.7
-0.1
-0.6
carbon source
adipate (C)
+0.2
+0.1
-0.5
+0.4
+0.7
carbon source
L-Histidine (C)
+0.4
+0.8
+0.3
+0.2
-0.9
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.3
-0.1
+0.6
+0.7
-0.5
stress
R2A with Zinc 0.1 mM
+0.2
+0.9
+0.5
+0.2
-0.8
carbon source
Octanoic (C)
-0.9
+0.5
+0.2
+0.3
+1.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.0
+0.6
+0.8
-0.0
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.7
-0.2
+1.1
-0.1
+0.9
carbon source
L-Threonine (C)
+0.5
+1.0
+0.4
+0.3
+0.4
stress
R2A with Cephalothin 0.25 mg/ml
+0.6
+0.2
+1.6
+0.2
+0.2
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