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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23340 and RR42_RS23345 are separated by 104 nucleotides
RR42_RS23345 and RR42_RS23350 are separated by 296 nucleotides
RR42_RS23350 and RR42_RS23355 are separated by 126 nucleotides
RR42_RS23355 and RR42_RS23360 are separated by 34 nucleotides
RR42_RS23340: RR42_RS23340 - RNA ligase, at 567,044 to 568,270
_RS23340
RR42_RS23345: RR42_RS23345 - hypothetical protein, at 568,375 to 569,220
_RS23345
RR42_RS23350: RR42_RS23350 - flagellar biosynthesis protein FliR, at 569,517 to 570,302
_RS23350
RR42_RS23355: RR42_RS23355 - flagellar biosynthetic protein FliQ, at 570,429 to 570,698
_RS23355
RR42_RS23360: RR42_RS23360 - flagellar biosynthesis protein flip, at 570,733 to 571,575
_RS23360
Group
Condition
RR42
_RS23340
RR42
_RS23345
RR42
_RS23350
RR42
_RS23355
RR42
_RS23360
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.3
-0.5
-1.4
-0.0
carbon source
Azelaic (C)
-0.2
-0.5
-0.4
-0.0
-1.1
carbon source
D-Lactate (C)
-0.3
-0.3
-0.5
-0.4
-0.6
carbon source
Azelaic (C)
+0.2
-0.3
+0.3
-1.7
-0.6
carbon source
Octanoic (C)
+0.4
+0.4
+0.1
-1.9
-0.9
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.1
+0.4
-1.1
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-0.4
-0.4
-0.6
-0.4
nitrogen source
L-Valine (N)
+0.2
-0.5
-0.4
-0.4
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.0
-0.6
-0.3
-0.8
+0.3
stress
R2A with Lomefloxacin 0.001 mM
-0.5
-0.2
-0.3
+0.4
-0.5
carbon source
Ethanol (C)
-0.1
-0.2
-0.3
-0.8
+0.3
stress
R2A with Chlorite 4 mM
-0.3
+0.0
-0.1
-1.0
+0.4
carbon source
L-Glutamine (C)
+0.3
-0.3
-0.3
-0.8
+0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.3
-0.8
-0.3
+0.2
+0.5
stress
R2A with nitrate 150 mM
-0.4
+0.0
+0.1
-0.8
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
+0.1
+0.7
-0.9
-0.1
carbon source
Protocatechuic Acid (C)
-0.3
+0.6
+0.4
-0.4
-0.3
carbon source
L-Histidine (C)
+0.3
-0.6
-0.6
+0.9
+0.1
carbon source
Protocatechuic Acid (C)
+0.1
-0.0
+0.7
-0.9
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
+0.2
+0.4
-0.4
+0.5
nitrogen source
L-Glutamine (N)
+0.2
-0.3
+0.8
-0.7
+0.3
lb
LB
-0.8
+0.1
+0.6
+1.0
-0.5
carbon source
Carbon source Phenylacetic 2.5 mM
-0.2
+0.2
+0.2
-0.5
+0.7
carbon source
Valeric (C)
+0.4
+0.6
+0.5
-0.9
+0.2
carbon source
Octanoic (C)
+0.5
+0.2
+0.4
-0.4
+0.2
temperature
R2A 23C
+0.2
-0.3
+0.5
+0.5
+0.2
carbon source
Valeric (C)
+0.7
+0.3
+0.2
-0.3
+0.3
nitrogen source
L-Isoleucine (N)
+0.2
+0.1
+0.7
+0.6
-0.2
carbon source
Pimelic (C)
+0.5
+0.4
+0.4
+0.5
-0.2
nitrogen source
Glucuronamide (N)
+0.1
+0.2
+0.6
+1.0
+0.2
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