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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23295 and RR42_RS23300 are separated by 29 nucleotides
RR42_RS23300 and RR42_RS23305 are separated by 93 nucleotides
RR42_RS23305 and RR42_RS23310 overlap by 4 nucleotides
RR42_RS23310 and RR42_RS23315 overlap by 4 nucleotides
RR42_RS23295: RR42_RS23295 - hypothetical protein, at 557,128 to 557,865
_RS23295
RR42_RS23300: RR42_RS23300 - hypothetical protein, at 557,895 to 558,860
_RS23300
RR42_RS23305: RR42_RS23305 - hypothetical protein, at 558,954 to 559,529
_RS23305
RR42_RS23310: RR42_RS23310 - cytochrome B6, at 559,526 to 560,863
_RS23310
RR42_RS23315: RR42_RS23315 - serine/threonine protein phosphatase, at 560,860 to 562,416
_RS23315
Group
Condition
RR42
_RS23295
RR42
_RS23300
RR42
_RS23305
RR42
_RS23310
RR42
_RS23315
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.8
-0.1
-2.3
-0.2
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.0
-2.9
+0.2
+0.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.0
-1.9
-0.1
-0.3
stress
R2A with Chloride 300 mM
+0.0
-0.3
-1.8
-0.2
-0.3
stress
R2A with A22 0.01 mg/ml
-0.2
-0.2
-0.9
-0.3
-0.5
stress
R2A with Nickel (II) chloride 0.35 mM
-0.8
-0.3
+0.2
-0.5
-0.6
stress
R2A with Cobalt chloride 0.5 mM
-1.5
-0.2
-0.2
+0.1
-0.2
carbon source
Heptanoic (C)
-0.0
+0.3
-1.7
-0.2
-0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.8
-0.1
-1.6
-0.2
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
-0.2
-1.3
-0.1
+0.1
carbon source
L-Lactate (C)
+0.3
+0.1
-1.3
+0.1
-0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.3
-0.6
+0.5
-0.4
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
+0.1
-1.4
+0.2
+0.2
carbon source
Protocatechuic Acid (C)
-0.5
-0.5
-0.2
-0.2
+0.6
nitrogen source
L-Lysine (N)
-0.8
-0.3
+0.8
-0.1
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.7
+0.2
+0.7
-0.3
-0.2
carbon source
Valeric (C)
-1.0
-0.3
+0.6
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-1.1
-0.3
+0.8
-0.1
+0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.8
-0.3
-0.2
-0.2
-0.3
carbon source
L-Leucine (C)
-0.2
-0.1
+1.0
-0.4
-0.5
carbon source
Dodecandioic (C)
-0.7
+0.1
+0.8
-0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.3
+1.3
-0.2
-0.4
nitrogen source
L-Tryptophan (N)
+0.4
-0.3
+1.1
-0.2
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.8
-0.7
+1.6
+0.3
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.3
+1.2
-0.3
+0.2
stress
R2A with nitrate 150 mM
+0.1
-0.3
+1.4
+0.1
+0.0
lb
LB
+1.6
+0.3
-0.4
-0.2
+0.3
r2a
R2A
+0.5
-0.1
+1.1
-0.1
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
-0.1
+1.8
-0.2
-0.3
carbon source
L-Malic (C)
+0.3
+0.0
+1.1
+0.3
+0.2
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