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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23170 and RR42_RS23175 are separated by 192 nucleotides
RR42_RS23175 and RR42_RS23180 are separated by 219 nucleotides
RR42_RS23180 and RR42_RS23185 are separated by 233 nucleotides
RR42_RS23185 and RR42_RS23190 are separated by 120 nucleotides
RR42_RS23170: RR42_RS23170 - LysR family transcriptional regulator, at 530,650 to 531,585
_RS23170
RR42_RS23175: RR42_RS23175 - mandelate racemase, at 531,778 to 532,947
_RS23175
RR42_RS23180: RR42_RS23180 - ligand-gated channel, at 533,167 to 535,353
_RS23180
RR42_RS23185: RR42_RS23185 - membrane protein, at 535,587 to 536,636
_RS23185
RR42_RS23190: RR42_RS23190 - membrane protein, at 536,757 to 537,284
_RS23190
Group
Condition
RR42
_RS23170
RR42
_RS23175
RR42
_RS23180
RR42
_RS23185
RR42
_RS23190
temperature
R2A 37C
-0.0
-0.1
-0.1
-0.3
-0.3
stress
R2A with nitrate 150 mM
-0.4
-0.1
+0.1
-0.1
-0.2
lb
LB
-0.2
-0.3
-0.3
+0.1
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-0.4
+0.3
-0.0
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.1
-0.3
+0.2
-0.3
carbon source
D,L-Lactate (C)
-0.1
-0.2
+0.2
+0.0
-0.4
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-0.1
-0.0
-0.2
-0.5
carbon source
Azelaic (C)
-0.0
+0.2
-0.0
-0.6
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.3
+0.0
+0.4
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
+0.2
+0.0
-0.2
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.4
-0.2
+0.2
+0.2
+0.1
carbon source
succinate (C)
-0.1
+0.2
-0.1
+0.2
-0.3
carbon source
L-Histidine (C)
-0.0
+0.1
-0.1
+0.3
-0.3
stress
R2A with Cobalt chloride 0.3 mM
-0.3
+0.1
+0.3
-0.0
+0.0
carbon source
Protocatechuic Acid (C)
+0.3
-0.2
-0.0
+0.3
-0.1
stress
R2A with Cephalothin 0.25 mg/ml
+0.3
+0.1
+0.2
-0.3
-0.0
nitrogen source
L-Glutamine (N)
+0.4
+0.1
-0.1
-0.3
+0.2
carbon source
L-Alanine (C)
-0.2
+0.2
+0.0
+0.5
-0.0
stress
R2A with Chlorite 4 mM
-0.1
+0.0
+0.1
+0.4
-0.1
nitrogen source
L-Asparagine (N)
-0.1
-0.1
+0.0
+0.5
+0.0
carbon source
D-Fructose (C)
-0.2
+0.1
+0.1
+0.5
-0.0
nitrogen source
L-Valine (N)
-0.1
+0.1
-0.1
+0.5
+0.1
carbon source
L-Tryptophan (C)
+0.1
+0.2
+0.1
+0.3
-0.1
carbon source
Ethanol (C)
-0.2
+0.0
+0.2
+0.2
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.1
-0.1
+0.9
-0.0
nitrogen source
L-Leucine (N)
+0.3
+0.1
-0.1
+0.2
+0.1
carbon source
L-Leucine (C)
-0.1
+0.2
+0.0
+0.6
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
+0.1
-0.1
+0.0
+0.5
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
-0.1
+0.1
+0.5
+0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.2
-0.1
+0.4
+0.3
+0.2
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RR42_RS23180
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