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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23085 and RR42_RS23090 are separated by 33 nucleotides
RR42_RS23090 and RR42_RS23095 are separated by 92 nucleotides
RR42_RS23095 and RR42_RS23100 are separated by 89 nucleotides
RR42_RS23100 and RR42_RS23105 are separated by 135 nucleotides
RR42_RS23085: RR42_RS23085 - cytochrome C biogenesis protein CcdA, at 513,751 to 514,677
_RS23085
RR42_RS23090: RR42_RS23090 - 2,5-dioxovalerate dehydrogenase, at 514,711 to 516,312
_RS23090
RR42_RS23095: RR42_RS23095 - Zn-dependent hydrolase, at 516,405 to 517,169
_RS23095
RR42_RS23100: RR42_RS23100 - AraC family transcriptional regulator, at 517,259 to 518,224
_RS23100
RR42_RS23105: RR42_RS23105 - hypothetical protein, at 518,360 to 518,818
_RS23105
Group
Condition
RR42
_RS23085
RR42
_RS23090
RR42
_RS23095
RR42
_RS23100
RR42
_RS23105
lb
LB
-1.0
-0.9
-0.6
+0.3
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-0.2
-0.2
-0.4
-1.1
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.0
-0.8
-0.0
-0.5
stress
R2A with Zinc 0.1 mM
-0.0
-0.3
-0.3
-0.3
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.7
-0.1
-0.4
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-0.5
-0.2
-0.1
-0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.1
-0.8
-0.2
+0.2
carbon source
adipate (C)
-0.4
+0.1
-0.8
+0.1
+0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.0
-0.7
+0.4
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.6
+0.2
-0.0
-0.3
+0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-0.3
+0.3
-0.4
-0.3
+0.0
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-0.4
-0.2
+0.3
-0.1
carbon source
Disodium Glutarate (C)
-0.4
+0.4
-0.2
-0.4
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-0.5
-0.1
-0.1
-0.3
stress
R2A with nitrate 150 mM
-0.4
+0.4
-0.4
-0.1
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
-0.4
-0.2
+0.2
-0.4
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
-0.2
-0.5
+0.3
+0.2
carbon source
Hexanoic (C)
+0.3
-0.7
+0.2
-0.1
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.2
-0.1
+0.5
-0.5
stress
R2A with Cobalt chloride 0.3 mM
-0.2
+0.2
+0.6
-0.3
-0.6
carbon source
Ethanol (C)
-0.4
+0.3
-0.1
+0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
-0.2
-0.2
+0.3
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
-0.4
+0.5
+0.1
+0.1
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.4
+0.2
-0.0
+0.1
-0.5
nitrogen source
nitrate (N)
+0.2
+0.2
+0.3
-0.2
-0.3
carbon source
adipate (C)
-0.0
+0.7
-0.2
+0.1
-0.2
carbon source
Protocatechuic Acid (C)
-0.3
+0.3
+0.2
-0.0
+0.3
nitrogen source
Glucuronamide (N)
+0.2
-0.4
+0.7
+0.1
+0.4
carbon source
Heptanoic (C)
+0.2
+0.8
-0.2
+0.2
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.4
+0.5
+0.2
-0.2
+0.6
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