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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS23040 and RR42_RS23045 are separated by 165 nucleotides
RR42_RS23045 and RR42_RS23050 are separated by 60 nucleotides
RR42_RS23050 and RR42_RS23055 are separated by 55 nucleotides
RR42_RS23055 and RR42_RS23060 are separated by 205 nucleotides
RR42_RS23040: RR42_RS23040 - hypothetical protein, at 504,230 to 504,514
_RS23040
RR42_RS23045: RR42_RS23045 - LysR family transcriptional regulator, at 504,680 to 505,585
_RS23045
RR42_RS23050: RR42_RS23050 - 4-oxalomesaconate tautomerase, at 505,646 to 506,725
_RS23050
RR42_RS23055: RR42_RS23055 - ABC transporter substrate-binding protein, at 506,781 to 507,728
_RS23055
RR42_RS23060: RR42_RS23060 - hypothetical protein, at 507,934 to 508,926
_RS23060
Group
Condition
RR42
_RS23040
RR42
_RS23045
RR42
_RS23050
RR42
_RS23055
RR42
_RS23060
carbon source
Dodecandioic (C)
-0.0
-0.5
-1.2
-1.2
-0.3
lb
LB
-0.0
-0.6
-0.4
-1.2
-0.3
carbon source
Octanoic (C)
+0.0
-0.7
-0.6
-0.7
-0.2
carbon source
Octanoic (C)
-0.0
-0.6
-0.6
-1.1
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.1
-0.2
-0.2
-0.4
-0.1
carbon source
Dodecandioic (C)
+0.1
-0.3
-0.8
-0.7
-0.3
carbon source
Heptanoic (C)
+0.2
-0.3
-0.5
-1.1
-0.2
stress
R2A with Lomefloxacin 0.001 mM
-0.9
+0.3
-0.1
-0.1
-0.7
carbon source
Heptanoic (C)
-0.2
-0.0
-0.9
-0.5
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
-1.1
-0.1
+0.1
-0.1
-0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
-0.2
+0.2
-0.3
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
-0.0
-0.6
-0.6
+0.2
carbon source
L-Lactate (C)
-0.3
-0.3
+0.2
-0.1
-0.5
carbon source
succinate (C)
-0.6
-0.2
+0.2
-0.3
-0.0
stress
R2A with A22 0.01 mg/ml
-0.4
-0.2
+0.2
-0.1
-0.5
carbon source
Carbon source D,L-Lactate 10 mM
-1.1
+0.3
+0.1
+0.1
-0.3
carbon source
Hexanoic (C)
+0.2
+0.2
-0.4
-0.3
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
-0.3
+0.0
-0.1
+0.4
carbon source
Carbon source Phenylacetic 2.5 mM
+0.4
-0.9
-0.3
+0.3
-0.1
carbon source
adipate (C)
+0.6
-0.8
+0.0
+0.1
-0.0
stress
R2A with Zinc 0.1 mM
-0.7
+0.5
+0.2
-0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.7
-0.4
+0.1
-0.2
carbon source
L-Alanine (C)
+0.4
+0.2
-0.0
-0.6
+0.1
carbon source
Suberic (C)
+0.4
-0.5
+0.1
+0.4
+0.3
nitrogen source
Glycine (N)
+0.3
+0.6
+0.2
-0.2
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
-0.1
-0.4
+0.5
+0.7
stress
R2A with Cobalt chloride 0.3 mM
+1.0
-0.1
-0.0
+0.2
-0.3
nitrogen source
D-Alanine (N)
+0.5
+0.0
+0.4
+0.1
+0.3
nitrogen source
L-Leucine (N)
+0.7
+0.3
+0.3
-0.2
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
+0.4
-0.0
+0.4
+0.3
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