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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS22940 and RR42_RS22945 are separated by 137 nucleotides
RR42_RS22945 and RR42_RS22950 are separated by 177 nucleotides
RR42_RS22950 and RR42_RS22955 are separated by 126 nucleotides
RR42_RS22955 and RR42_RS22960 are separated by 168 nucleotides
RR42_RS22940: RR42_RS22940 - TetR family transcriptional regulator, at 480,674 to 481,348
_RS22940
RR42_RS22945: RR42_RS22945 - oxidoreductase, at 481,486 to 482,514
_RS22945
RR42_RS22950: RR42_RS22950 - cytochrome C550, at 482,692 to 483,549
_RS22950
RR42_RS22955: RR42_RS22955 - isocitrate dehydrogenase, at 483,676 to 484,707
_RS22955
RR42_RS22960: RR42_RS22960 - alpha/beta hydrolase, at 484,876 to 485,757
_RS22960
Group
Condition
RR42
_RS22940
RR42
_RS22945
RR42
_RS22950
RR42
_RS22955
RR42
_RS22960
temperature
R2A 23C
-1.6
-0.4
-0.8
-0.4
-0.4
nitrogen source
casaminos (N)
-0.4
-0.8
-0.5
-0.8
-0.4
temperature
R2A 23C
-1.4
-0.4
-0.4
-0.4
-0.4
stress
R2A with Cephalothin 0.25 mg/ml
-1.3
-0.2
-0.8
-0.2
-0.4
stress
R2A with nitrate 200 mM
-1.0
-0.2
-0.3
-0.3
-0.3
r2a
R2A
-0.6
-0.3
-0.5
-0.4
-0.3
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.6
-0.4
-0.3
-0.3
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
-1.5
-0.0
+0.4
-0.4
-0.2
stress
R2A with Zinc 0.1 mM
-0.8
-0.4
-0.1
-0.4
-0.1
nitrogen source
Glucuronamide (N)
-0.5
-0.6
-0.2
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.1
-0.2
+0.7
-0.6
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-2.2
-0.0
+1.4
-0.0
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.8
+0.1
+0.8
-0.3
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.6
-0.4
+0.1
-0.6
+0.2
lb
LB
-0.8
+0.2
+0.7
+0.1
-0.1
stress
R2A with Chlorite 4 mM
-0.4
+0.4
+0.8
-0.4
+0.1
stress
R2A with Lomefloxacin 0.001 mM
-1.1
+0.5
+1.1
+0.3
-0.3
carbon source
a-Ketoglutaric (C)
+0.9
-0.1
-0.3
+0.3
+0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.2
+1.3
-0.2
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
+0.5
+0.5
-0.2
+0.7
+0.1
carbon source
adipate (C)
+1.2
+0.3
+0.2
-0.2
+0.0
stress
R2A with Chlorite 4 mM
+0.2
+0.2
+1.2
+0.1
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.7
+0.5
+0.2
+0.1
+0.2
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+1.0
+0.2
+0.1
+0.4
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
+0.3
+1.6
-0.3
-0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.8
+0.2
+0.5
+0.2
+0.2
stress
R2A with nitrate 200 mM
+0.8
+0.2
+0.3
+0.5
+0.2
stress
R2A with Cobalt chloride 0.3 mM
+1.0
+0.2
+0.3
+0.8
+0.5
stress
R2A with Nickel (II) chloride 0.35 mM
+1.6
+0.5
+0.4
+0.4
+0.5
stress
R2A with Nickel (II) chloride 0.5 mM
+1.9
+0.8
+0.5
+0.4
+0.5
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RR42_RS22950
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