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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS22885 and RR42_RS22890 are separated by 129 nucleotides
RR42_RS22890 and RR42_RS22895 are separated by 287 nucleotides
RR42_RS22895 and RR42_RS22900 overlap by 4 nucleotides
RR42_RS22900 and RR42_RS22905 are separated by 81 nucleotides
RR42_RS22885: RR42_RS22885 - sugar ABC transporter permease, at 465,940 to 466,806
_RS22885
RR42_RS22890: RR42_RS22890 - TetR family transcriptional regulator, at 466,936 to 467,667
_RS22890
RR42_RS22895: RR42_RS22895 - 5-oxoprolinase, at 467,955 to 470,084
_RS22895
RR42_RS22900: RR42_RS22900 - 5-oxoprolinase, at 470,081 to 471,814
_RS22900
RR42_RS22905: RR42_RS22905 - myristoyl transferase, at 471,896 to 472,885
_RS22905
Group
Condition
RR42
_RS22885
RR42
_RS22890
RR42
_RS22895
RR42
_RS22900
RR42
_RS22905
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-1.9
-0.4
-0.3
-0.8
lb
LB
-0.2
-2.4
+0.1
-0.0
-0.2
carbon source
adipate (C)
-0.2
-1.6
+0.1
-0.3
-0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.0
-1.7
-0.1
-0.1
-0.6
carbon source
Protocatechuic Acid (C)
-0.3
-1.8
-0.1
-0.1
+0.1
carbon source
adipate (C)
-0.2
-1.5
-0.2
-0.0
-0.1
carbon source
Pimelic (C)
-0.1
-1.7
-0.0
-0.2
+0.0
stress
R2A with Chloride 300 mM
-0.1
-0.6
-0.3
+0.0
-0.8
carbon source
Pimelic (C)
-0.1
-1.3
-0.2
-0.2
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
-1.7
+0.1
+0.0
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-2.1
+0.2
+0.1
+0.1
stress
R2A with Zinc 0.1 mM
-0.4
-0.8
-0.2
+0.0
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-1.6
-0.1
+0.1
-0.2
nitrogen source
nitrite (N)
+0.2
-1.6
+0.0
+0.0
+0.1
nitrogen source
L-Leucine (N)
-0.2
-0.9
-0.1
+0.2
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
-1.0
-0.0
+0.4
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-1.4
-0.2
+0.4
+0.2
nitrogen source
L-Glutamine (N)
-0.4
-0.9
+0.0
-0.1
+0.4
nitrogen source
D-Alanine (N)
+0.2
-1.2
-0.0
+0.2
-0.1
carbon source
Protocatechuic Acid (C)
+0.1
-1.3
+0.1
-0.2
+0.6
nitrogen source
D-Alanine (N)
+0.1
-1.1
-0.2
+0.3
+0.3
nitrogen source
L-Valine (N)
+0.3
-1.1
-0.1
+0.0
+0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.6
-0.4
+0.2
+0.3
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
+0.5
+0.2
+0.0
-0.7
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
+1.8
+0.6
+0.6
+0.9
stress
R2A with Cobalt chloride 0.5 mM
+0.1
+1.7
+0.9
+1.1
+1.0
stress
R2A with Nickel (II) chloride 0.25 mM
+0.4
+2.5
+0.9
+0.9
+0.8
stress
R2A with Nickel (II) chloride 0.35 mM
+0.8
+7.8
+2.3
+2.4
+2.3
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
+9.2
+3.4
+3.7
+4.1
stress
R2A with Nickel (II) chloride 0.35 mM
+0.7
+8.8
+4.6
+4.1
+3.6
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RR42_RS22895
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