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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS22475 and RR42_RS22480 are separated by 35 nucleotides
RR42_RS22480 and RR42_RS22485 are separated by 54 nucleotides
RR42_RS22485 and RR42_RS22490 are separated by 304 nucleotides
RR42_RS22490 and RR42_RS22495 overlap by 4 nucleotides
RR42_RS22475: RR42_RS22475 - hypothetical protein, at 379,595 to 379,810
_RS22475
RR42_RS22480: RR42_RS22480 - FAD-dependent oxidoreductase, at 379,846 to 381,579
_RS22480
RR42_RS22485: RR42_RS22485 - MBL fold metallo-hydrolase, at 381,634 to 382,593
_RS22485
RR42_RS22490: RR42_RS22490 - IclR family transcriptional regulator, at 382,898 to 383,725
_RS22490
RR42_RS22495: RR42_RS22495 - hypothetical protein, at 383,722 to 384,561
_RS22495
Group
Condition
RR42
_RS22475
RR42
_RS22480
RR42
_RS22485
RR42
_RS22490
RR42
_RS22495
carbon source
L-Leucine (C)
N.D.
-0.0
-0.3
-1.3
-2.1
carbon source
L-Alanine (C)
N.D.
-0.1
-0.2
-0.7
-1.8
carbon source
L-Leucine (C)
N.D.
-0.1
-0.2
-0.9
-1.2
carbon source
Protocatechuic Acid (C)
N.D.
-0.3
-0.3
-0.4
-1.4
carbon source
a-Ketoglutaric (C)
N.D.
-0.3
-0.2
-0.4
-1.5
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.0
-0.0
-0.9
-1.5
carbon source
L-Glutamine (C)
N.D.
-0.2
+0.1
-0.7
-1.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.2
+0.3
-1.1
-1.2
carbon source
L-Glutamine (C)
N.D.
+0.0
-0.1
-1.3
-1.0
carbon source
L-Proline (C)
N.D.
-0.0
-0.0
-0.9
-1.2
carbon source
L-Tryptophan (C)
N.D.
-0.2
-0.0
-0.6
-1.4
carbon source
D-Lactate (C)
N.D.
-0.0
-0.2
-0.7
-1.0
carbon source
Ethanol (C)
N.D.
-0.2
+0.4
-0.5
-1.5
carbon source
L-Tryptophan (C)
N.D.
+0.0
-0.2
-0.5
-1.1
carbon source
Protocatechuic Acid (C)
N.D.
+0.2
-0.1
-1.3
-0.5
stress
R2A with Chloride 300 mM
N.D.
-0.2
+0.1
-0.3
-1.3
lb
LB
N.D.
-0.2
+0.3
-0.2
-1.7
nitrogen source
D-Alanine (N)
N.D.
-0.1
-0.5
-0.7
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
-0.2
-0.2
-0.9
-0.4
nitrogen source
L-Lysine (N)
N.D.
-0.1
+0.0
-0.4
-1.2
carbon source
L-Malic (C)
N.D.
+0.1
-0.2
-0.4
-1.1
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.1
+0.0
-0.2
-1.4
carbon source
Carbon source D,L-Lactate 10 mM
N.D.
+0.0
+0.3
-0.3
-1.5
carbon source
Ethanol (C)
N.D.
-0.1
+0.2
-0.7
-0.8
carbon source
a-Ketoglutaric (C)
N.D.
-0.2
+0.2
-0.8
-0.6
carbon source
Carbon source Phenylacetic 2.5 mM
N.D.
+0.2
+0.4
-0.8
-0.5
carbon source
Disodium Glutarate (C)
N.D.
-0.3
-0.1
+0.9
+0.8
carbon source
Disodium Glutarate (C)
N.D.
-0.0
+0.1
+0.9
+1.1
carbon source
adipate (C)
N.D.
-0.0
+1.2
+7.3
+7.5
carbon source
adipate (C)
N.D.
-0.2
+1.0
+7.5
+8.0
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