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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS22415 and RR42_RS22420 are separated by 141 nucleotides
RR42_RS22420 and RR42_RS22425 are separated by 312 nucleotides
RR42_RS22425 and RR42_RS22430 are separated by 8 nucleotides
RR42_RS22430 and RR42_RS22435 overlap by 4 nucleotides
RR42_RS22415: RR42_RS22415 - hypothetical protein, at 364,047 to 364,883
_RS22415
RR42_RS22420: RR42_RS22420 - penicillin-binding protein, at 365,025 to 367,448
_RS22420
RR42_RS22425: RR42_RS22425 - CDP-alcohol phosphatidyltransferase, at 367,761 to 368,429
_RS22425
RR42_RS22430: RR42_RS22430 - 2OG-Fe(II) oxygenase, at 368,438 to 369,280
_RS22430
RR42_RS22435: RR42_RS22435 - membrane protein, at 369,277 to 370,284
_RS22435
Group
Condition
RR42
_RS22415
RR42
_RS22420
RR42
_RS22425
RR42
_RS22430
RR42
_RS22435
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
+0.2
-1.9
-1.3
-2.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.4
-2.0
-1.0
-1.8
stress
R2A with Lomefloxacin 0.001 mM
-0.5
+0.0
-0.6
-0.6
-1.4
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.5
-0.2
-0.5
-0.4
-1.0
stress
R2A with Cobalt chloride 0.5 mM
-0.2
-0.2
-0.1
-0.6
-1.4
stress
R2A with Nickel (II) chloride 0.35 mM
+0.1
-0.4
-0.4
-0.3
-1.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
+0.7
-1.0
-0.4
-0.8
nitrogen source
L-Glutamine (N)
-0.4
+0.0
-0.9
-0.2
-0.4
stress
R2A with nitrate 150 mM
-0.0
+0.0
-0.6
-0.1
-1.0
stress
R2A with Cobalt chloride 0.3 mM
-0.1
-0.4
-0.6
-0.0
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.2
-0.3
-0.3
-0.1
-1.0
stress
R2A with nitrate 200 mM
+0.1
-0.1
-0.4
-0.1
-1.0
stress
R2A with Chloride 300 mM
-0.2
-0.1
-0.8
+0.1
-0.5
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.1
-0.3
+0.1
-0.3
-0.6
stress
R2A with Nickel (II) chloride 0.25 mM
+0.1
-0.1
-0.6
-0.3
-0.4
carbon source
Hexanoic (C)
+0.0
+0.0
-0.5
-0.3
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.1
-0.3
-0.2
-0.5
carbon source
Hexanoic (C)
+0.1
+0.1
-0.5
-0.2
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
+1.9
-0.7
-0.5
-1.0
lb
LB
+0.0
+0.2
-0.5
-0.0
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.2
-0.3
+0.0
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-0.0
-0.5
+0.2
+0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
-0.1
-0.6
+0.2
+0.3
carbon source
L-Lactate (C)
+0.3
+0.1
+0.4
+0.1
-0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.1
-0.4
+0.4
+0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.0
-0.1
+0.2
+1.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.2
+0.3
+0.1
+0.6
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
+0.1
+0.2
+0.3
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
+0.3
+0.5
+0.0
+0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-0.0
+0.6
+0.1
+0.9
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RR42_RS22425
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