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Gene
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Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS22330 and RR42_RS22335 are separated by 414 nucleotides
RR42_RS22335 and RR42_RS22340 are separated by 32 nucleotides
RR42_RS22340 and RR42_RS22345 are separated by 233 nucleotides
RR42_RS22345 and RR42_RS22350 are separated by 150 nucleotides
RR42_RS22330: RR42_RS22330 - ester cyclase, at 350,297 to 350,800
_RS22330
RR42_RS22335: RR42_RS22335 - hemagglutinin, at 351,215 to 352,492
_RS22335
RR42_RS22340: RR42_RS22340 - peptidase, at 352,525 to 353,808
_RS22340
RR42_RS22345: RR42_RS22345 - UDP-N-acetylmuramate--alanine ligase, at 354,042 to 354,395
_RS22345
RR42_RS22350: RR42_RS22350 - transporter, at 354,546 to 354,974
_RS22350
Group
Condition
RR42
_RS22330
RR42
_RS22335
RR42
_RS22340
RR42
_RS22345
RR42
_RS22350
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.3
-0.2
+0.2
-0.2
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.8
+0.2
+0.1
-0.8
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
+0.3
-0.3
-1.1
N.D.
carbon source
L-Lactate (C)
-0.3
+0.1
-0.0
-0.8
N.D.
nitrogen source
L-Threonine (N)
-0.1
+0.2
-0.2
-0.9
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
+0.2
-0.1
-0.8
N.D.
nitrogen source
Glucuronamide (N)
-0.2
-0.0
+0.2
-0.7
N.D.
nitrogen source
L-Tryptophan (N)
-0.2
+0.2
+0.1
-0.7
N.D.
carbon source
succinate (C)
-0.3
-0.2
+0.2
-0.3
N.D.
carbon source
Disodium Glutarate (C)
-0.9
+0.2
+0.2
-0.0
N.D.
nitrogen source
D-Alanine (N)
+0.3
-0.1
+0.0
-0.7
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
-0.5
+0.1
-0.2
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
+0.1
-0.4
-0.3
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.2
+0.3
+0.2
-0.6
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
-0.4
-0.2
+0.1
N.D.
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-0.1
-0.7
+0.4
N.D.
carbon source
Suberic (C)
-0.3
+0.4
-0.2
+0.3
N.D.
carbon source
Dodecandioic (C)
+0.4
+0.1
+0.2
-0.5
N.D.
stress
R2A with nitrate 150 mM
-0.4
+0.2
+0.1
+0.4
N.D.
carbon source
adipate (C)
-0.5
+0.1
-0.2
+0.9
N.D.
carbon source
Suberic (C)
-0.4
+0.5
-0.1
+0.3
N.D.
nitrogen source
L-Valine (N)
-0.2
+0.3
-0.2
+0.5
N.D.
carbon source
Protocatechuic Acid (C)
+0.6
+0.4
+0.2
-0.8
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.2
-0.0
+0.4
+0.5
N.D.
stress
R2A with Zinc 0.1 mM
+0.2
+0.6
+0.2
-0.3
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
-0.2
+0.3
+0.5
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
+0.2
-0.1
+0.7
N.D.
lb
LB
-0.0
-0.2
+0.1
+1.0
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
+0.3
+0.3
+0.5
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.5
+0.7
+0.2
+0.0
N.D.
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