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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS22290 and RR42_RS22295 are separated by 50 nucleotides
RR42_RS22295 and RR42_RS22300 are separated by 226 nucleotides
RR42_RS22300 and RR42_RS22305 are separated by 20 nucleotides
RR42_RS22305 and RR42_RS22310 are separated by 12 nucleotides
RR42_RS22290: RR42_RS22290 - cytochrome C biogenesis protein, at 341,415 to 343,223
_RS22290
RR42_RS22295: RR42_RS22295 - methionine sulfoxide reductase B, at 343,274 to 343,813
_RS22295
RR42_RS22300: RR42_RS22300 - chemotaxis protein CheY, at 344,040 to 344,762
_RS22300
RR42_RS22305: RR42_RS22305 - histidine kinase, at 344,783 to 346,276
_RS22305
RR42_RS22310: RR42_RS22310 - LysR family transcriptional regulator, at 346,289 to 347,188
_RS22310
Group
Condition
RR42
_RS22290
RR42
_RS22295
RR42
_RS22300
RR42
_RS22305
RR42
_RS22310
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
-1.3
-0.1
-0.3
-0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
-0.4
+0.0
-0.9
-0.2
nitrogen source
L-Valine (N)
-0.3
-1.0
-0.2
+0.0
-0.2
carbon source
L-Histidine (C)
+0.1
-1.3
-0.1
-0.2
-0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-1.2
+0.2
-0.3
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
-1.5
+0.1
+0.2
+0.1
nitrogen source
L-Tryptophan (N)
-0.2
-1.0
-0.1
+0.1
-0.0
carbon source
L-Asparagine (C)
-0.2
-0.9
-0.2
+0.4
-0.0
temperature
R2A 37C
-0.5
+0.4
+0.0
-0.3
-0.4
carbon source
Azelaic (C)
-0.4
+0.4
+0.1
-0.2
-0.6
nitrogen source
L-Leucine (N)
-0.0
-0.6
-0.4
+0.4
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
-0.7
-0.1
+0.1
+0.3
carbon source
adipate (C)
-0.5
+0.3
+0.3
-0.2
-0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
+0.1
+0.3
-0.3
-0.6
carbon source
Heptanoic (C)
-0.2
+0.2
+0.5
-0.2
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-0.6
+0.0
+0.3
+0.4
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.9
+0.5
+0.0
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
+0.7
+0.1
+0.1
-0.2
stress
R2A with copper (II) chloride 0.25 mM
-0.3
+0.6
+0.3
-0.3
-0.0
carbon source
Pimelic (C)
-0.2
+0.8
+0.1
-0.1
-0.2
carbon source
adipate (C)
-0.0
+0.7
+0.2
-0.2
-0.2
carbon source
Disodium Glutarate (C)
-0.0
+0.7
+0.2
+0.1
-0.3
carbon source
succinate (C)
+0.0
+1.0
+0.0
-0.1
-0.2
carbon source
propionate (C)
-0.1
+1.0
+0.3
-0.0
-0.3
nitrogen source
D-Alanine (N)
+0.1
+1.0
+0.1
-0.1
-0.2
nitrogen source
L-Tryptophan (N)
+0.3
+0.9
-0.0
-0.2
-0.1
carbon source
Suberic (C)
+0.3
+1.1
+0.2
-0.2
-0.5
carbon source
succinate (C)
+0.1
+1.3
+0.1
-0.2
-0.2
nitrogen source
Glycine (N)
+0.1
+1.0
-0.1
-0.1
+0.3
carbon source
Valeric (C)
+0.1
+1.2
-0.1
+0.0
+0.1
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