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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS22245 and RR42_RS22250 are separated by 25 nucleotides
RR42_RS22250 and RR42_RS22255 are separated by 23 nucleotides
RR42_RS22255 and RR42_RS22260 are separated by 24 nucleotides
RR42_RS22260 and RR42_RS22265 are separated by 51 nucleotides
RR42_RS22245: RR42_RS22245 - cytochrome C biogenesis protein, at 329,373 to 330,320
_RS22245
RR42_RS22250: RR42_RS22250 - hypothetical protein, at 330,346 to 330,642
_RS22250
RR42_RS22255: RR42_RS22255 - hypothetical protein, at 330,666 to 332,096
_RS22255
RR42_RS22260: RR42_RS22260 - hypothetical protein, at 332,121 to 333,455
_RS22260
RR42_RS22265: RR42_RS22265 - hypothetical protein, at 333,507 to 337,334
_RS22265
Group
Condition
RR42
_RS22245
RR42
_RS22250
RR42
_RS22255
RR42
_RS22260
RR42
_RS22265
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.5
-2.1
+0.0
-0.2
-0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.3
-1.0
+0.0
-0.3
-0.3
stress
R2A with Lomefloxacin 0.001 mM
-0.4
-0.6
-0.1
-0.3
-0.1
carbon source
propionate (C)
+0.0
-1.6
+0.0
+0.0
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
-1.5
+0.1
-0.1
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.4
-0.5
+0.2
-0.3
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-1.0
-0.0
-0.6
+0.3
carbon source
Disodium Glutarate (C)
+0.3
-1.4
-0.1
+0.1
-0.1
carbon source
butyrate (C)
-0.2
-0.8
+0.2
-0.1
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.3
-0.5
-0.1
-0.3
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.0
-0.4
-0.1
+0.3
+0.1
nitrogen source
L-Isoleucine (N)
+0.3
-0.8
+0.1
-0.3
-0.2
nitrogen source
L-Phenylalanine (N)
-0.2
-0.7
+0.1
+0.2
-0.1
carbon source
Pimelic (C)
+0.2
-1.1
+0.0
-0.1
+0.2
nitrogen source
L-Glutamine (N)
+0.2
+1.0
-0.2
-1.0
-0.4
carbon source
L-Glutamine (C)
+0.5
-0.2
+0.1
-0.3
-0.3
stress
R2A with Chloride 300 mM
+0.5
-0.4
-0.1
-0.3
+0.1
carbon source
Pimelic (C)
+0.3
-0.7
-0.1
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
+0.7
-0.4
-0.4
-0.2
nitrogen source
L-Leucine (N)
+0.5
+0.1
+0.1
-0.5
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.9
-0.6
-0.1
-0.1
-0.1
stress
R2A with Chloride 300 mM
-0.5
+0.7
+0.3
-0.1
-0.1
carbon source
adipate (C)
+0.6
-0.6
+0.3
+0.1
+0.1
carbon source
Heptanoic (C)
+0.2
+0.4
-0.1
+0.3
-0.3
lb
LB
-0.7
+1.3
+0.3
-0.0
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
+0.7
+0.2
+0.2
+0.0
carbon source
Protocatechuic Acid (C)
+0.6
-0.2
-0.1
+0.2
+0.4
carbon source
Suberic (C)
+0.3
+0.4
-0.1
+0.6
+0.0
carbon source
L-Tryptophan (C)
+0.4
+0.3
+0.3
+0.2
+0.2
carbon source
Heptanoic (C)
+0.7
+0.2
+0.3
+0.1
+0.2
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