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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS21710 and RR42_RS21715 are separated by 273 nucleotides
RR42_RS21715 and RR42_RS21720 are separated by 260 nucleotides
RR42_RS21720 and RR42_RS21725 are separated by 11 nucleotides
RR42_RS21725 and RR42_RS21730 are separated by 67 nucleotides
RR42_RS21710: RR42_RS21710 - haloacid dehalogenase, at 198,467 to 199,174
_RS21710
RR42_RS21715: RR42_RS21715 - ATPase AAA, at 199,448 to 201,484
_RS21715
RR42_RS21720: RR42_RS21720 - acetoin catabolism protein X, at 201,745 to 202,869
_RS21720
RR42_RS21725: RR42_RS21725 - ABC transporter substrate-binding protein, at 202,881 to 203,885
_RS21725
RR42_RS21730: RR42_RS21730 - pyruvate dehydrogenase subunit beta, at 203,953 to 204,969
_RS21730
Group
Condition
RR42
_RS21710
RR42
_RS21715
RR42
_RS21720
RR42
_RS21725
RR42
_RS21730
lb
LB
-0.4
+0.1
-2.5
-0.8
-0.4
nitrogen source
L-Serine (N)
-0.1
-0.3
-2.3
-0.1
-0.2
stress
R2A with Chloride 300 mM
-0.2
-0.2
-1.3
+0.1
-0.7
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.1
-1.7
-0.1
-0.3
stress
R2A with Lomefloxacin 0.001 mM
-1.1
+0.0
-0.9
-0.1
-0.1
carbon source
Protocatechuic Acid (C)
-0.3
-0.3
-1.4
-0.0
-0.2
carbon source
L-Leucine (C)
-0.0
-0.0
-2.3
+0.1
+0.1
nitrogen source
L-Isoleucine (N)
-0.4
-0.3
-1.0
+0.1
-0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.4
+0.0
-1.2
-0.1
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.0
-0.2
-0.1
-0.7
+0.3
nitrogen source
L-Serine (N)
-0.3
+0.0
-1.0
-0.3
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.1
-1.2
-0.2
+0.3
stress
R2A with Cobalt chloride 0.5 mM
+0.0
-0.2
-0.9
-0.3
+0.1
carbon source
L-Alanine (C)
+0.1
+0.0
-1.3
-0.0
-0.0
nitrogen source
L-Leucine (N)
+0.2
+0.0
-1.6
+0.1
-0.0
carbon source
Pimelic (C)
+0.3
-0.1
-0.9
-0.2
-0.2
nitrogen source
Glycine (N)
+0.2
-0.2
-0.9
+0.1
-0.3
carbon source
L-Glutamine (C)
+0.4
+0.0
-1.6
-0.1
+0.5
nitrogen source
L-Citrulline (N)
+0.3
-0.0
-0.8
+0.1
-0.4
carbon source
L-Tryptophan (C)
-0.3
+0.2
-0.5
+0.2
-0.2
stress
R2A with nitrate 200 mM
+0.4
+0.2
-0.7
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
-0.1
-0.5
+0.4
+0.5
carbon source
Suberic (C)
+0.3
-0.1
+0.5
+0.1
-0.9
r2a
R2A
-0.1
-0.3
+0.5
-0.3
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.1
-0.3
-0.4
+0.4
nitrogen source
L-Isoleucine (N)
+0.4
+0.2
-0.9
+0.4
+0.4
carbon source
Heptanoic (C)
-0.5
+0.0
+1.0
-0.1
+0.1
temperature
R2A 37C
-0.3
-0.1
+0.8
+0.1
+0.4
carbon source
Azelaic (C)
-0.4
-0.0
+1.0
+0.2
+0.2
carbon source
Azelaic (C)
+0.3
+0.3
+1.4
+0.0
-0.2
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