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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS21580 and RR42_RS21585 are separated by 45 nucleotides
RR42_RS21585 and RR42_RS21590 are separated by 457 nucleotides
RR42_RS21590 and RR42_RS21595 overlap by 4 nucleotides
RR42_RS21595 and RR42_RS21600 are separated by 144 nucleotides
RR42_RS21580: RR42_RS21580 - cysteine desulfurase, at 167,020 to 168,204
_RS21580
RR42_RS21585: RR42_RS21585 - membrane protein, at 168,250 to 169,857
_RS21585
RR42_RS21590: RR42_RS21590 - hypothetical protein, at 170,315 to 173,065
_RS21590
RR42_RS21595: RR42_RS21595 - IclR family transcriptional regulator, at 173,062 to 173,826
_RS21595
RR42_RS21600: RR42_RS21600 - inorganic pyrophosphatase/exopolyphosphatase, at 173,971 to 174,999
_RS21600
Group
Condition
RR42
_RS21580
RR42
_RS21585
RR42
_RS21590
RR42
_RS21595
RR42
_RS21600
carbon source
Octanoic (C)
-0.3
+0.0
-0.1
-4.0
+0.3
carbon source
Protocatechuic Acid (C)
-0.1
-0.1
-0.2
-2.9
+0.0
carbon source
adipate (C)
-0.1
-0.2
-0.1
-2.7
+0.1
carbon source
Octanoic (C)
-0.2
+0.1
-0.0
-3.2
+0.4
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
+0.1
-3.4
+0.5
carbon source
Heptanoic (C)
+0.1
+0.1
-0.1
-2.6
-0.1
carbon source
Heptanoic (C)
-0.1
+0.5
-0.2
-2.7
-0.0
carbon source
adipate (C)
-0.5
-0.0
-0.1
-2.1
+0.4
carbon source
Pimelic (C)
-0.1
+0.1
-0.2
-2.0
+0.0
carbon source
Hexanoic (C)
-0.1
-0.1
-0.1
-1.8
+0.1
nitrogen source
L-Glutamine (N)
-0.4
-0.4
-0.1
-0.7
-0.3
carbon source
Pimelic (C)
-0.2
+0.2
-0.0
-1.8
+0.1
carbon source
Valeric (C)
-0.2
+0.1
-0.1
-1.2
-0.2
carbon source
Disodium Glutarate (C)
-0.5
-0.0
-0.1
-1.1
+0.2
carbon source
propionate (C)
-0.5
+0.1
-0.1
-1.2
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.1
-0.2
-1.4
+0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.1
+0.2
-0.1
-1.2
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.3
-0.1
-0.2
-1.0
+0.0
carbon source
Azelaic (C)
-0.4
+0.1
-0.1
-0.9
-0.2
nitrogen source
L-Isoleucine (N)
-0.1
-0.4
-0.1
-1.0
+0.1
carbon source
Disodium Glutarate (C)
-0.2
+0.3
-0.1
-1.7
+0.3
carbon source
propionate (C)
+0.1
-0.1
+0.0
-0.9
-0.4
carbon source
L-Malic (C)
+0.1
+0.2
-0.1
-1.0
-0.2
carbon source
Valeric (C)
+0.1
+0.2
-0.1
-1.2
+0.2
nitrogen source
Glycine (N)
-0.2
-0.2
+0.2
-0.8
+0.2
carbon source
Suberic (C)
-0.0
+0.2
+0.2
-1.2
+0.2
carbon source
Azelaic (C)
-0.2
+0.4
-0.1
-1.2
+0.5
lb
LB
-0.4
-0.7
+0.2
+0.0
+0.6
carbon source
Dodecandioic (C)
+0.3
+0.2
+0.0
-0.6
+0.6
stress
R2A with Cisplatin 0.001 mg/ml
+0.0
+0.0
-0.0
+2.1
+0.0
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