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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS21555 and RR42_RS21560 are separated by 11 nucleotides
RR42_RS21560 and RR42_RS21565 are separated by 120 nucleotides
RR42_RS21565 and RR42_RS21570 are separated by 646 nucleotides
RR42_RS21570 and RR42_RS21575 are separated by 125 nucleotides
RR42_RS21555: RR42_RS21555 - membrane protein, at 161,530 to 162,519
_RS21555
RR42_RS21560: RR42_RS21560 - hypothetical protein, at 162,531 to 163,229
_RS21560
RR42_RS21565: RR42_RS21565 - hypothetical protein, at 163,350 to 164,309
_RS21565
RR42_RS21570: RR42_RS21570 - membrane protein, at 164,956 to 166,104
_RS21570
RR42_RS21575: RR42_RS21575 - peptidase E, at 166,230 to 166,985
_RS21575
Group
Condition
RR42
_RS21555
RR42
_RS21560
RR42
_RS21565
RR42
_RS21570
RR42
_RS21575
carbon source
L-Proline (C)
-0.1
-1.3
-0.1
-0.1
-0.1
nitrogen source
L-Asparagine (N)
+0.1
-0.8
-0.2
-0.2
-0.1
carbon source
butyrate (C)
+0.1
-0.5
-0.4
-0.1
-0.1
nitrogen source
L-Isoleucine (N)
+0.1
-0.7
-0.1
-0.1
-0.3
carbon source
D-Gluconic Acid (C)
+0.1
-0.6
-0.3
-0.1
-0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.0
-0.2
-0.4
+0.1
-0.6
carbon source
D-Lactate (C)
+0.2
-0.6
-0.4
-0.1
-0.1
carbon source
L-Malic (C)
+0.1
-0.3
-0.1
-0.2
-0.3
carbon source
L-Leucine (C)
+0.2
-0.8
-0.1
-0.1
-0.1
nitrogen source
nitrate (N)
+0.2
-0.4
-0.3
+0.0
-0.4
carbon source
D,L-Lactate (C)
+0.0
-0.8
-0.1
-0.2
+0.3
carbon source
L-Alanine (C)
+0.2
-0.7
+0.1
-0.0
-0.3
carbon source
Disodium Glutarate (C)
-0.0
-0.7
+0.2
-0.1
+0.1
nitrogen source
L-Tryptophan (N)
+0.5
-0.6
-0.1
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
+0.3
-0.4
-0.0
-0.2
stress
R2A with Chlorite 4 mM
+0.1
-0.7
-0.2
+0.2
+0.2
lb
LB
-0.2
+0.4
-0.2
-0.2
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
+0.1
+0.2
-0.1
+0.1
nitrogen source
L-Glutamine (N)
+0.3
-0.6
+0.3
-0.1
-0.0
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
-0.3
-0.3
-0.0
+0.2
carbon source
L-Lactate (C)
+0.2
-0.5
-0.0
+0.1
+0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
+0.5
-0.4
+0.0
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.5
+0.2
+0.2
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
+0.2
+0.1
+0.2
+0.3
carbon source
Protocatechuic Acid (C)
+0.0
+0.8
-0.2
+0.0
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
+0.6
+0.0
-0.0
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
+1.0
-0.0
+0.1
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.4
+0.7
+0.2
-0.2
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
-0.0
+0.7
+0.2
+0.1
+0.1
carbon source
Trisodium citrate (C)
+0.1
+0.6
-0.0
+0.1
+0.4
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