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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS21505 and RR42_RS21510 are separated by 41 nucleotides
RR42_RS21510 and RR42_RS21515 are separated by 123 nucleotides
RR42_RS21515 and RR42_RS21520 are separated by 226 nucleotides
RR42_RS21520 and RR42_RS21525 are separated by 23 nucleotides
RR42_RS21505: RR42_RS21505 - hypothetical protein, at 153,402 to 153,971
_RS21505
RR42_RS21510: RR42_RS21510 - lysine transporter LysE, at 154,013 to 154,651
_RS21510
RR42_RS21515: RR42_RS21515 - LysR family transcriptional regulator, at 154,775 to 155,713
_RS21515
RR42_RS21520: RR42_RS21520 - flagellar brake protein, at 155,940 to 156,689
_RS21520
RR42_RS21525: RR42_RS21525 - hypothetical protein, at 156,713 to 157,810
_RS21525
Group
Condition
RR42
_RS21505
RR42
_RS21510
RR42
_RS21515
RR42
_RS21520
RR42
_RS21525
stress
R2A with Paraquat dichloride 0.064 mg/ml
-1.9
-0.7
+0.3
-0.7
-0.3
nitrogen source
L-Phenylalanine (N)
-2.0
-0.2
-0.0
-0.4
+0.1
carbon source
Protocatechuic Acid (C)
-1.9
-0.2
-0.3
+0.2
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
-1.7
-0.1
-0.3
+0.0
-0.2
carbon source
L-Leucine (C)
-0.1
-0.8
-0.3
-0.4
-0.5
nitrogen source
L-Glutamine (N)
-2.7
+0.0
+0.2
+0.2
+0.3
carbon source
Protocatechuic Acid (C)
-0.5
-0.2
-0.6
-0.1
-0.3
stress
R2A with Sisomicin 0.035 mg/ml
-1.8
-0.1
+0.4
+0.1
-0.1
carbon source
Hexanoic (C)
-1.2
-0.0
-0.3
+0.3
-0.2
stress
R2A with Zinc 0.1 mM
-1.6
-0.5
+0.7
-0.5
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.2
-0.2
+0.3
-0.1
+0.2
nitrogen source
casaminos (N)
-0.9
+0.4
+0.1
-0.2
-0.3
carbon source
adipate (C)
+0.4
-0.2
-0.6
-0.2
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
-1.2
+0.2
+0.4
+0.1
-0.3
nitrogen source
L-Citrulline (N)
-1.1
+0.1
+0.3
+0.1
-0.1
stress
R2A with Chloride 300 mM
+0.6
-0.3
-0.4
-0.3
-0.2
stress
R2A with Chlorite 4 mM
+0.5
-0.4
-0.0
-0.5
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.7
-0.1
-0.6
+0.1
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.9
-0.6
-0.4
+0.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.2
+0.5
+0.4
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
-0.3
-0.0
-0.5
+0.6
+0.4
nitrogen source
L-Isoleucine (N)
+0.8
-0.4
+0.1
+0.0
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.8
-0.2
-0.3
+0.2
+0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.3
+0.5
-0.2
+0.1
+0.4
carbon source
Trisodium citrate (C)
+0.7
+0.3
-0.2
+0.2
-0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.5
+0.4
-0.2
+0.3
-0.3
carbon source
D-Gluconic Acid (C)
+0.4
-0.4
+0.4
+0.3
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+1.1
+0.7
-0.2
-0.4
+0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+1.4
+0.0
+0.3
-0.1
+0.0
nitrogen source
L-Lysine (N)
+1.3
+0.2
+0.2
+0.1
+0.1
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