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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS21410 and RR42_RS21415 are separated by 144 nucleotides
RR42_RS21415 and RR42_RS21420 are separated by 160 nucleotides
RR42_RS21420 and RR42_RS21425 are separated by 149 nucleotides
RR42_RS21425 and RR42_RS21430 are separated by 12 nucleotides
RR42_RS21410: RR42_RS21410 - DNA-binding protein, at 133,775 to 134,095
_RS21410
RR42_RS21415: RR42_RS21415 - hypothetical protein, at 134,240 to 134,638
_RS21415
RR42_RS21420: RR42_RS21420 - acyl-CoA dehydrogenase, at 134,799 to 135,956
_RS21420
RR42_RS21425: RR42_RS21425 - hypothetical protein, at 136,106 to 136,963
_RS21425
RR42_RS21430: RR42_RS21430 - alpha-ketoglutarate permease, at 136,976 to 138,286
_RS21430
Group
Condition
RR42
_RS21410
RR42
_RS21415
RR42
_RS21420
RR42
_RS21425
RR42
_RS21430
carbon source
adipate (C)
-0.4
-0.6
-3.6
-1.7
-1.5
carbon source
adipate (C)
-0.4
-0.3
-3.0
-2.1
-1.5
carbon source
Dodecandioic (C)
+0.1
-0.3
-3.5
-0.9
+0.0
carbon source
Dodecandioic (C)
-0.2
-0.2
-3.4
-0.5
-0.0
carbon source
Suberic (C)
-0.2
-0.0
-3.4
-0.2
+0.0
carbon source
Suberic (C)
+0.1
-0.1
-3.2
-0.2
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.5
-0.1
-1.2
-0.3
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
-0.1
-1.5
-0.2
-0.0
stress
R2A with Nickel (II) chloride 0.5 mM
-0.5
-0.5
-0.1
-0.3
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
+0.1
-0.1
-0.3
+0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.5
-0.0
+0.1
-0.2
-0.1
carbon source
propionate (C)
-0.4
-0.3
+0.1
-0.2
-0.0
carbon source
Carbon source D,L-Lactate 10 mM
-0.6
+0.2
-0.2
-0.1
+0.1
carbon source
succinate (C)
-0.3
-0.5
+0.0
+0.1
+0.1
carbon source
L-Alanine (C)
+0.3
-0.5
-0.1
-0.1
-0.0
carbon source
Valeric (C)
+0.2
-0.5
+0.1
-0.1
+0.0
carbon source
Heptanoic (C)
+0.1
-0.3
+0.2
-0.2
-0.2
carbon source
Protocatechuic Acid (C)
-0.1
-0.6
+0.2
+0.4
-0.0
carbon source
Hexanoic (C)
+0.3
-0.8
+0.1
+0.2
+0.1
carbon source
Protocatechuic Acid (C)
+0.4
-0.3
-0.2
+0.0
+0.0
carbon source
Heptanoic (C)
+0.2
-0.6
+0.2
+0.2
+0.0
nitrogen source
L-Glutamine (N)
-0.4
+0.4
+0.1
-0.1
+0.2
stress
R2A with copper (II) chloride 0.25 mM
+0.2
+0.4
-0.0
+0.1
-0.3
carbon source
L-Phenylalanine (C)
+0.5
+0.2
-0.3
-0.2
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
+0.5
+0.1
+0.0
+0.1
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
+0.6
+0.2
+0.1
-0.0
nitrogen source
L-Valine (N)
+0.3
+0.5
+0.1
-0.2
-0.0
lb
LB
+0.2
+0.3
+0.3
-0.1
-0.0
nitrogen source
D-Alanine (N)
+0.5
+0.2
+0.1
-0.1
+0.1
nitrogen source
L-Isoleucine (N)
+0.5
+0.1
+0.2
-0.1
+0.1
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