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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS21355 and RR42_RS21360 overlap by 4 nucleotides
RR42_RS21360 and RR42_RS21365 are separated by 19 nucleotides
RR42_RS21365 and RR42_RS21370 are separated by 52 nucleotides
RR42_RS21370 and RR42_RS21375 are separated by 116 nucleotides
RR42_RS21355: RR42_RS21355 - ABC transporter permease, at 120,388 to 121,392
_RS21355
RR42_RS21360: RR42_RS21360 - ABC transporter permease, at 121,389 to 122,228
_RS21360
RR42_RS21365: RR42_RS21365 - ABC transporter ATP-binding protein, at 122,248 to 123,885
_RS21365
RR42_RS21370: RR42_RS21370 - 4-aminobutyrate aminotransferase, at 123,938 to 125,200
_RS21370
RR42_RS21375: RR42_RS21375 - succinate-semialdehyde dehydrogenase, at 125,317 to 126,783
_RS21375
Group
Condition
RR42
_RS21355
RR42
_RS21360
RR42
_RS21365
RR42
_RS21370
RR42
_RS21375
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
-0.5
-0.5
-0.2
-0.8
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.9
+0.5
+0.0
-0.1
-0.8
nitrogen source
L-Citrulline (N)
-0.5
-0.6
-0.4
-0.1
+0.4
carbon source
Heptanoic (C)
-0.9
-0.1
-0.4
+0.1
+0.4
nitrogen source
L-Leucine (N)
-0.2
-0.8
-0.3
+0.3
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
+0.4
-0.5
+0.2
-0.5
nitrogen source
L-Glutamine (N)
+0.1
-1.1
+0.5
-0.1
-0.1
carbon source
Azelaic (C)
-0.1
-1.0
-0.1
+0.2
+0.3
nitrogen source
L-Leucine (N)
-0.4
-0.9
+0.1
+0.1
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.2
+0.6
+0.2
-0.1
+0.1
carbon source
Hexanoic (C)
+0.2
+0.6
-0.6
-0.1
-0.4
stress
R2A with Cobalt chloride 0.3 mM
+0.6
-0.1
-0.5
-0.4
+0.2
r2a
R2A
+0.3
-0.6
+0.2
+0.3
-0.4
carbon source
Ethanol (C)
-0.4
-0.4
+0.6
-0.3
+0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.6
-0.3
+0.5
+0.0
+0.3
carbon source
L-Histidine (C)
+0.3
-0.5
+0.1
-0.3
+0.4
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.7
+0.5
-0.2
+0.2
carbon source
Protocatechuic Acid (C)
+0.2
-0.2
-0.4
-0.1
+0.7
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
-0.2
+0.6
-0.0
-0.5
nitrogen source
L-Phenylalanine (N)
+0.3
-0.6
-0.2
+0.1
+0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
+0.4
+0.2
-0.4
+0.4
carbon source
Azelaic (C)
+0.1
-0.4
-0.1
+0.0
+0.9
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
+0.5
+0.1
+0.2
+0.6
stress
R2A with Chlorite 4 mM
+0.2
+0.7
+0.5
-0.1
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
+0.7
+0.2
+0.2
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.4
+0.4
+0.7
-0.1
+0.3
carbon source
Disodium Glutarate (C)
-0.3
+0.4
+0.3
-0.1
+0.7
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.3
+0.8
+0.4
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.9
+0.3
+0.6
-0.2
-0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.8
+0.1
+1.0
+0.2
+0.4
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