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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS21245 and RR42_RS21250 are separated by 247 nucleotides
RR42_RS21250 and RR42_RS21255 are separated by 268 nucleotides
RR42_RS21255 and RR42_RS21260 are separated by 118 nucleotides
RR42_RS21260 and RR42_RS21265 are separated by 106 nucleotides
RR42_RS21245: RR42_RS21245 - nicotinate-nucleotide pyrophosphorylase, at 92,417 to 93,253
_RS21245
RR42_RS21250: RR42_RS21250 - antibiotic biosynthesis monooxygenase, at 93,501 to 93,800
_RS21250
RR42_RS21255: RR42_RS21255 - LysR family transcriptional regulator, at 94,069 to 94,947
_RS21255
RR42_RS21260: RR42_RS21260 - isovaleryl-CoA dehydrogenase, at 95,066 to 96,862
_RS21260
RR42_RS21265: RR42_RS21265 - ABC transporter substrate-binding protein, at 96,969 to 97,949
_RS21265
Group
Condition
RR42
_RS21245
RR42
_RS21250
RR42
_RS21255
RR42
_RS21260
RR42
_RS21265
temperature
R2A 23C
-0.3
N.D.
-0.5
-0.1
-0.3
stress
R2A with Lomefloxacin 0.001 mM
-0.3
N.D.
-0.5
-0.0
-0.4
carbon source
succinate (C)
-0.2
N.D.
-0.3
-0.1
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
N.D.
-0.4
-0.1
-0.2
stress
R2A with Lomefloxacin 0.00075 mM
-0.4
N.D.
-0.4
-0.1
+0.3
nitrogen source
L-Lysine (N)
+0.1
N.D.
-0.2
-0.2
-0.3
nitrogen source
L-Leucine (N)
+0.2
N.D.
-0.4
-0.1
-0.3
carbon source
Disodium Glutarate (C)
+0.2
N.D.
-0.1
-0.2
-0.4
carbon source
Octanoic (C)
-0.2
N.D.
+0.0
+0.1
-0.5
carbon source
Heptanoic (C)
+0.2
N.D.
-0.5
+0.2
-0.4
carbon source
Disodium Glutarate (C)
-0.0
N.D.
+0.2
-0.4
-0.3
nitrogen source
L-Serine (N)
+0.2
N.D.
-0.5
+0.0
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
N.D.
+0.5
-0.4
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
N.D.
-0.3
+0.0
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
N.D.
-0.0
+0.0
-0.6
carbon source
L-Tryptophan (C)
+0.3
N.D.
+0.2
-0.0
-0.5
carbon source
Hexanoic (C)
+0.4
N.D.
-0.1
-0.2
-0.1
carbon source
Valeric (C)
+0.5
N.D.
-0.3
+0.1
-0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
N.D.
+0.3
-0.2
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
N.D.
+0.3
-0.1
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
N.D.
+0.1
-0.2
+0.2
carbon source
Protocatechuic Acid (C)
+0.4
N.D.
-0.2
+0.3
+0.1
stress
R2A with nitrate 200 mM
+0.5
N.D.
-0.0
-0.0
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.6
N.D.
+0.0
-0.1
+0.2
carbon source
Azelaic (C)
+0.4
N.D.
+0.2
+0.1
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.4
N.D.
+0.2
+0.1
+0.3
carbon source
a-Ketoglutaric (C)
+0.3
N.D.
+0.4
+0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
N.D.
+0.4
+0.0
+0.1
carbon source
adipate (C)
-0.2
N.D.
+3.5
+1.5
-0.6
carbon source
adipate (C)
-0.1
N.D.
+3.6
+1.4
-0.4
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