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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS21230 and RR42_RS21235 are separated by 70 nucleotides
RR42_RS21235 and RR42_RS21240 are separated by 571 nucleotides
RR42_RS21240 and RR42_RS21245 are separated by 150 nucleotides
RR42_RS21245 and RR42_RS21250 are separated by 247 nucleotides
RR42_RS21230: RR42_RS21230 - ABC transporter substrate-binding protein, at 88,047 to 89,039
_RS21230
RR42_RS21235: RR42_RS21235 - thymidine phosphorylase, at 89,110 to 91,149
_RS21235
RR42_RS21240: RR42_RS21240 - MarR family transcriptional regulator, at 91,721 to 92,266
_RS21240
RR42_RS21245: RR42_RS21245 - nicotinate-nucleotide pyrophosphorylase, at 92,417 to 93,253
_RS21245
RR42_RS21250: RR42_RS21250 - antibiotic biosynthesis monooxygenase, at 93,501 to 93,800
_RS21250
Group
Condition
RR42
_RS21230
RR42
_RS21235
RR42
_RS21240
RR42
_RS21245
RR42
_RS21250
lb
LB
+0.0
-1.3
N.D.
-0.5
N.D.
carbon source
Suberic (C)
-0.1
-0.6
N.D.
-0.2
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
-0.2
-0.2
N.D.
-0.3
N.D.
carbon source
Disodium Glutarate (C)
-0.1
-0.4
N.D.
-0.0
N.D.
stress
R2A with Lomefloxacin 0.00075 mM
-0.0
-0.2
N.D.
-0.4
N.D.
carbon source
Protocatechuic Acid (C)
+0.0
-0.3
N.D.
-0.3
N.D.
stress
R2A with Zinc 0.1 mM
-0.0
-0.5
N.D.
+0.1
N.D.
nitrogen source
Glucuronamide (N)
-0.2
-0.3
N.D.
+0.1
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
-0.3
N.D.
-0.2
N.D.
stress
R2A with nitrate 150 mM
+0.1
-0.3
N.D.
-0.2
N.D.
carbon source
Pimelic (C)
-0.1
-0.4
N.D.
+0.2
N.D.
nitrogen source
L-Serine (N)
-0.1
-0.2
N.D.
+0.2
N.D.
nitrogen source
L-Leucine (N)
-0.0
-0.3
N.D.
+0.2
N.D.
carbon source
Hexanoic (C)
-0.2
-0.3
N.D.
+0.4
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.2
-0.2
N.D.
+0.3
N.D.
carbon source
Disodium Glutarate (C)
+0.1
-0.3
N.D.
+0.2
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-0.3
N.D.
+0.3
N.D.
stress
R2A with Chloride 300 mM
+0.0
-0.4
N.D.
+0.4
N.D.
carbon source
Azelaic (C)
-0.1
-0.2
N.D.
+0.4
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.1
N.D.
+0.3
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-0.0
-0.2
N.D.
+0.4
N.D.
carbon source
a-Ketoglutaric (C)
+0.2
-0.3
N.D.
+0.3
N.D.
nitrogen source
L-Glutamine (N)
+0.1
-0.2
N.D.
+0.3
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
+0.1
-0.2
N.D.
+0.4
N.D.
carbon source
Valeric (C)
-0.1
+0.1
N.D.
+0.5
N.D.
nitrogen source
L-Threonine (N)
-0.1
+0.4
N.D.
+0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.2
N.D.
+0.3
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
+0.0
N.D.
+0.6
N.D.
stress
R2A with nitrate 200 mM
-0.0
+0.1
N.D.
+0.5
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.3
N.D.
+0.4
N.D.
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