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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS20955 and RR42_RS20960 are separated by 889 nucleotides
RR42_RS20960 and RR42_RS20965 are separated by 44 nucleotides
RR42_RS20965 and RR42_RS20970 are separated by 63 nucleotides
RR42_RS20970 and RR42_RS20975 overlap by 4 nucleotides
RR42_RS20955: RR42_RS20955 - LuxR family transcriptional regulator, at 28,248 to 29,189
_RS20955
RR42_RS20960: RR42_RS20960 - SAM-dependent methyltransferase, at 30,079 to 30,891
_RS20960
RR42_RS20965: RR42_RS20965 - transferase, at 30,936 to 32,123
_RS20965
RR42_RS20970: RR42_RS20970 - hypothetical protein, at 32,187 to 33,467
_RS20970
RR42_RS20975: RR42_RS20975 - hypothetical protein, at 33,464 to 34,282
_RS20975
Group
Condition
RR42
_RS20955
RR42
_RS20960
RR42
_RS20965
RR42
_RS20970
RR42
_RS20975
stress
R2A with Zinc 0.1 mM
+0.2
+0.0
-0.6
-0.8
-0.9
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
-0.6
-1.3
+0.2
+0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.1
-1.5
+0.5
-0.8
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.2
-0.0
-0.7
-0.3
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
-0.1
-0.2
-0.3
-0.7
temperature
R2A 37C
-0.2
-0.1
-0.8
-0.1
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.4
-0.3
-0.3
-0.5
stress
R2A with Cobalt chloride 0.5 mM
+0.2
+0.0
-0.9
-0.9
+0.5
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
-0.4
-0.4
-0.5
+0.1
nitrogen source
L-Valine (N)
-0.4
-0.3
+0.3
+0.0
-0.5
lb
LB
-0.3
-0.1
+0.6
+0.0
-1.0
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
+0.1
+0.3
-0.3
-0.9
carbon source
a-Ketoglutaric (C)
-0.1
+0.3
-1.0
-0.2
+0.3
nitrogen source
nitrite (N)
-0.3
+0.0
-0.7
-0.3
+0.7
stress
R2A with copper (II) chloride 0.25 mM
+0.4
-0.0
-0.5
-0.4
+0.0
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+0.5
+0.1
-0.5
-0.1
carbon source
D-Fructose (C)
-0.5
-0.3
+0.8
-0.4
+0.1
nitrogen source
D-Alanine (N)
-0.4
-0.1
-0.4
+0.2
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.1
+0.6
-0.4
-0.5
nitrogen source
L-Glutamine (N)
-0.3
+0.2
+0.4
-0.6
+0.4
carbon source
Protocatechuic Acid (C)
+0.1
-0.0
+0.8
-0.1
-0.4
stress
R2A with A22 0.01 mg/ml
+0.1
+0.2
+0.2
-0.4
+0.4
carbon source
Valeric (C)
+0.3
+0.3
+0.3
+0.3
-0.6
carbon source
D-Lactate (C)
-0.3
-0.2
+0.7
+0.1
+0.2
carbon source
propionate (C)
+0.1
+0.3
+0.2
+0.3
-0.3
carbon source
Heptanoic (C)
+0.2
+0.4
+0.4
+0.0
-0.3
nitrogen source
L-Leucine (N)
-0.1
-0.1
+0.8
-0.0
+0.6
carbon source
Azelaic (C)
-0.3
+0.2
+0.9
+0.2
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.1
+0.4
+0.6
+0.2
carbon source
Suberic (C)
+0.0
+0.6
+0.5
+0.6
+0.2
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RR42_RS20965
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