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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS20820 and RR42_RS20825 are separated by 196 nucleotides
RR42_RS20825 and RR42_RS20830 are separated by 217 nucleotides
RR42_RS20830 and RR42_RS20835 are separated by 320 nucleotides
RR42_RS20835 and RR42_RS20840 are separated by 187 nucleotides
RR42_RS20820: RR42_RS20820 - glyoxalase, at 4,518,554 to 4,518,940
_RS20820
RR42_RS20825: RR42_RS20825 - addiction module antitoxin, at 4,519,137 to 4,519,373
_RS20825
RR42_RS20830: RR42_RS20830 - insertase, at 4,519,591 to 4,521,261
_RS20830
RR42_RS20835: RR42_RS20835 - ribonuclease P, at 4,521,582 to 4,521,974
_RS20835
RR42_RS20840: RR42_RS20840 - 50S ribosomal protein L34, at 4,522,162 to 4,522,296
_RS20840
Group
Condition
RR42
_RS20820
RR42
_RS20825
RR42
_RS20830
RR42
_RS20835
RR42
_RS20840
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.0
-1.1
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-1.2
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
-1.0
N.D.
N.D.
N.D.
stress
R2A with Zinc 0.1 mM
-0.2
-0.9
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
-0.3
-0.8
N.D.
N.D.
N.D.
stress
R2A with Sisomicin 0.035 mg/ml
-0.1
-0.9
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.2
-0.7
N.D.
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
-0.9
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.3
-0.6
N.D.
N.D.
N.D.
carbon source
Valeric (C)
-0.4
-0.4
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
-0.3
N.D.
N.D.
N.D.
carbon source
Hexanoic (C)
-0.2
-0.5
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+0.0
-0.7
N.D.
N.D.
N.D.
nitrogen source
L-Citrulline (N)
+0.0
-0.7
N.D.
N.D.
N.D.
nitrogen source
L-Glutamine (N)
+0.2
-0.8
N.D.
N.D.
N.D.
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-0.7
N.D.
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.6
N.D.
N.D.
N.D.
carbon source
Disodium Glutarate (C)
+0.2
-0.7
N.D.
N.D.
N.D.
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
-0.5
N.D.
N.D.
N.D.
carbon source
Octanoic (C)
-0.4
+0.5
N.D.
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
-0.2
+0.5
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.5
N.D.
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
+0.3
+0.4
N.D.
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
+0.6
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.0
+0.8
N.D.
N.D.
N.D.
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.4
+0.4
N.D.
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
+0.1
+0.7
N.D.
N.D.
N.D.
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.3
+0.6
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.7
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
+0.8
N.D.
N.D.
N.D.
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