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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS20275 and RR42_RS20280 are separated by 95 nucleotides
RR42_RS20280 and RR42_RS20285 are separated by 9 nucleotides
RR42_RS20285 and RR42_RS20290 are separated by 381 nucleotides
RR42_RS20290 and RR42_RS20295 are separated by 170 nucleotides
RR42_RS20275: RR42_RS20275 - ABC transporter permease, at 4,385,888 to 4,387,096
_RS20275
RR42_RS20280: RR42_RS20280 - histidinol dehydrogenase, at 4,387,192 to 4,387,917
_RS20280
RR42_RS20285: RR42_RS20285 - amino acid ABC transporter ATP-binding protein, at 4,387,927 to 4,388,703
_RS20285
RR42_RS20290: RR42_RS20290 - choline dehydrogenase, at 4,389,085 to 4,390,785
_RS20290
RR42_RS20295: RR42_RS20295 - alpha/beta hydrolase, at 4,390,956 to 4,391,891
_RS20295
Group
Condition
RR42
_RS20275
RR42
_RS20280
RR42
_RS20285
RR42
_RS20290
RR42
_RS20295
nitrogen source
L-Glutamine (N)
+0.4
+0.2
-0.5
-0.5
-2.0
stress
R2A with copper (II) chloride 0.25 mM
-0.2
-0.8
-0.6
+0.0
-0.3
carbon source
D-Lactate (C)
-0.1
-0.4
-1.1
-0.0
-0.1
carbon source
Disodium Glutarate (C)
-0.9
-0.7
-0.6
+0.1
+0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.3
-0.4
+0.0
-0.6
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.1
-0.6
-0.7
-0.2
+0.3
nitrogen source
L-Citrulline (N)
+0.1
-0.3
-0.6
-0.1
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.5
-0.3
-0.4
+0.3
nitrogen source
L-Serine (N)
+0.3
+0.1
-0.8
+0.3
-1.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-0.5
+0.2
-0.1
-0.6
carbon source
Disodium Glutarate (C)
-1.0
-1.2
-0.2
+0.3
+1.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
+0.1
+0.3
-0.3
-0.7
carbon source
a-Ketoglutaric (C)
-0.2
-0.1
-1.0
-0.1
+0.4
carbon source
adipate (C)
-0.5
-0.8
+0.3
-0.0
-0.0
r2a
R2A
+0.1
-0.6
+0.2
-0.1
-0.6
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
-0.8
+0.1
-0.4
+0.4
lb
LB
+0.1
+0.2
-2.4
+0.4
+1.2
stress
R2A with Zinc 0.1 mM
+0.2
-0.3
-1.0
+0.0
+0.6
carbon source
adipate (C)
-0.6
-0.6
+0.0
+0.2
+0.6
stress
R2A with Chloride 300 mM
+0.0
+0.3
-0.6
-0.4
+0.3
carbon source
L-Proline (C)
-0.4
-0.3
-0.3
-0.1
+0.7
carbon source
L-Asparagine (C)
-0.1
-0.1
-0.8
-0.1
+0.9
carbon source
Dodecandioic (C)
-0.2
-0.0
+0.7
+0.1
-0.6
carbon source
Suberic (C)
+0.0
+0.6
+0.6
+0.2
-0.7
carbon source
Octanoic (C)
-0.4
-0.2
+0.4
+0.2
+1.0
carbon source
Suberic (C)
-0.1
-0.2
+0.6
-0.0
+0.7
stress
R2A with D-Cycloserine 0.01 mg/ml
+0.7
+0.7
+0.0
-0.0
-0.1
carbon source
Azelaic (C)
-0.1
+0.5
+0.3
-0.0
+0.6
carbon source
propionate (C)
-0.1
+0.3
+0.5
+0.2
+0.8
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
+0.3
+0.5
+0.1
+0.7
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