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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS20010 and RR42_RS20015 are separated by 751 nucleotides
RR42_RS20015 and RR42_RS20020 are separated by 388 nucleotides
RR42_RS20020 and RR42_RS20025 are separated by 64 nucleotides
RR42_RS20025 and RR42_RS20030 are separated by 207 nucleotides
RR42_RS20010: RR42_RS20010 - hypothetical protein, at 4,322,565 to 4,322,930
_RS20010
RR42_RS20015: RR42_RS20015 - tRNA-Arg, at 4,323,682 to 4,323,757
_RS20015
RR42_RS20020: RR42_RS20020 - cytochrome C, at 4,324,146 to 4,325,027
_RS20020
RR42_RS20025: RR42_RS20025 - coproporphyrinogen III oxidase, at 4,325,092 to 4,326,693
_RS20025
RR42_RS20030: RR42_RS20030 - ABC transporter permease, at 4,326,901 to 4,328,043
_RS20030
Group
Condition
RR42
_RS20010
RR42
_RS20015
RR42
_RS20020
RR42
_RS20025
RR42
_RS20030
temperature
R2A 23C
-0.8
N.D.
-0.5
-0.6
-0.3
stress
R2A with Cephalothin 0.25 mg/ml
-0.6
N.D.
-0.3
-0.3
-0.9
carbon source
adipate (C)
-0.2
N.D.
-0.5
-0.4
-0.9
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.7
N.D.
-0.7
-0.5
-0.1
stress
R2A with nitrate 200 mM
-0.3
N.D.
-1.3
-0.1
-0.1
nitrogen source
casaminos (N)
-0.6
N.D.
-0.2
-0.6
-0.4
carbon source
a-Ketoglutaric (C)
-0.3
N.D.
-0.6
-0.1
-0.7
stress
R2A with Cisplatin 0.001 mg/ml
-0.9
N.D.
-0.4
-0.5
+0.1
stress
R2A with Chloride 300 mM
-0.8
N.D.
-0.8
+0.1
-0.1
stress
R2A with Lomefloxacin 0.001 mM
-0.6
N.D.
-0.3
+0.0
-0.8
stress
R2A with Chloride 300 mM
+0.0
N.D.
-0.8
-0.3
-0.5
nitrogen source
L-Serine (N)
-0.6
N.D.
-0.1
-0.5
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-0.9
N.D.
-0.3
-0.0
-0.2
carbon source
L-Lactate (C)
-0.6
N.D.
-0.4
+0.1
-0.4
carbon source
succinate (C)
-0.9
N.D.
-0.2
+0.0
-0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
N.D.
+0.1
-0.3
-0.6
stress
R2A with Vancomycin 0.5 mg/ml
-0.9
N.D.
-0.2
+0.1
-0.1
carbon source
Valeric (C)
+0.4
N.D.
-0.5
-0.2
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
N.D.
+0.7
-0.0
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
N.D.
+0.9
-0.3
-0.1
carbon source
adipate (C)
+0.5
N.D.
-0.7
-0.2
+0.6
stress
R2A with Nickel (II) chloride 0.25 mM
+0.3
N.D.
+0.4
+0.1
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.4
N.D.
+0.6
+0.0
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.1
N.D.
+0.3
+0.4
+0.6
stress
R2A with Nickel (II) chloride 0.25 mM
+0.8
N.D.
+0.2
+0.1
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.4
N.D.
+1.6
-0.2
-0.1
lb
LB
+1.3
N.D.
+0.1
+0.3
+0.0
stress
R2A with Nickel (II) chloride 0.35 mM
+0.4
N.D.
+0.8
+0.4
-0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
N.D.
+2.0
+0.1
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
N.D.
+2.1
-0.0
+0.1
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