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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19900 and RR42_RS19905 are separated by 100 nucleotides
RR42_RS19905 and RR42_RS19910 are separated by 184 nucleotides
RR42_RS19910 and RR42_RS19915 are separated by 21 nucleotides
RR42_RS19915 and RR42_RS19920 are separated by 44 nucleotides
RR42_RS19900: RR42_RS19900 - MerR family transcriptional regulator, at 4,298,599 to 4,299,039
_RS19900
RR42_RS19905: RR42_RS19905 - S-adenosylmethionine decarboxylase, at 4,299,140 to 4,299,517
_RS19905
RR42_RS19910: RR42_RS19910 - membrane protein, at 4,299,702 to 4,301,222
_RS19910
RR42_RS19915: RR42_RS19915 - SPFH domain/Band 7 family protein 2, at 4,301,244 to 4,302,278
_RS19915
RR42_RS19920: RR42_RS19920 - membrane protein, at 4,302,323 to 4,302,709
_RS19920
Group
Condition
RR42
_RS19900
RR42
_RS19905
RR42
_RS19910
RR42
_RS19915
RR42
_RS19920
stress
R2A with Zinc 0.1 mM
-5.3
+0.1
-0.2
-0.5
+0.1
nitrogen source
casaminos (N)
-0.7
-0.8
-0.9
-0.8
-1.0
nitrogen source
Glucuronamide (N)
-1.4
-0.7
-0.6
-0.8
+0.2
lb
LB
-3.9
-0.2
-0.0
+0.5
+0.5
stress
R2A with Cephalothin 0.25 mg/ml
-0.7
-0.4
-0.4
-0.3
-1.2
nitrogen source
L-Serine (N)
-0.3
-0.6
-0.5
-0.5
-0.7
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.4
-0.5
-0.5
-0.7
-0.5
stress
R2A with Nickel (II) chloride 0.35 mM
-1.0
-0.6
-0.3
-0.3
-0.4
carbon source
Disodium Glutarate (C)
-2.5
+0.4
-0.1
-0.1
+0.1
carbon source
Hexanoic (C)
-1.7
-0.2
-0.2
-0.0
-0.2
carbon source
Suberic (C)
-2.2
-0.1
-0.2
+0.0
+0.1
nitrogen source
L-Isoleucine (N)
-0.3
-0.4
-0.4
-0.5
-0.6
temperature
R2A 23C
-0.0
-0.3
-0.6
-0.7
-0.6
r2a
R2A
-0.2
-0.8
-0.4
-0.5
-0.4
stress
R2A with Chloride 300 mM
-1.6
+0.3
+0.1
-0.3
-0.3
carbon source
Suberic (C)
-1.2
+0.3
-0.1
+0.1
-0.6
temperature
R2A 23C
+0.4
-0.6
-0.4
-0.3
-0.5
carbon source
L-Asparagine (C)
-0.9
+0.3
+0.2
-0.2
-0.8
carbon source
D,L-Lactate (C)
-1.7
+0.1
-0.0
+0.3
+0.0
stress
R2A with Cobalt chloride 0.3 mM
-1.5
+0.1
+0.2
+0.6
+0.9
r2a
R2A
-0.8
+0.5
+0.6
+0.4
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-0.6
+0.6
+0.4
+0.6
+0.3
stress
R2A with Nickel (II) chloride 0.5 mM
-0.8
+0.2
+0.4
+0.4
+1.2
carbon source
Octanoic (C)
+1.1
+0.4
+0.1
+0.4
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+2.1
-0.3
-0.1
+0.2
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.9
-0.2
+0.1
-0.5
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+2.5
-0.1
+0.1
+0.2
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+3.2
-0.0
-0.0
-0.2
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+1.8
+0.1
+0.0
+0.6
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+3.8
-0.5
+0.2
-0.3
-0.1
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