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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19865 and RR42_RS19870 are separated by 64 nucleotides
RR42_RS19870 and RR42_RS19875 are separated by 101 nucleotides
RR42_RS19875 and RR42_RS19880 are separated by 247 nucleotides
RR42_RS19880 and RR42_RS19885 are separated by 565 nucleotides
RR42_RS19865: RR42_RS19865 - hydroxypyruvate reductase, at 4,288,624 to 4,289,937
_RS19865
RR42_RS19870: RR42_RS19870 - pyruvate kinase, at 4,290,002 to 4,291,480
_RS19870
RR42_RS19875: RR42_RS19875 - metalloprotease, at 4,291,582 to 4,292,475
_RS19875
RR42_RS19880: RR42_RS19880 - hypothetical protein, at 4,292,723 to 4,292,950
_RS19880
RR42_RS19885: RR42_RS19885 - aminoglycoside transporter, at 4,293,516 to 4,296,614
_RS19885
Group
Condition
RR42
_RS19865
RR42
_RS19870
RR42
_RS19875
RR42
_RS19880
RR42
_RS19885
nitrogen source
nitrite (N)
+0.1
-0.3
-0.1
-0.2
-4.4
stress
R2A with Chloride 300 mM
-0.1
-0.1
-0.3
-0.4
-3.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.0
+0.1
-0.2
-1.0
-3.1
nitrogen source
L-Glutamine (N)
-0.0
-0.3
-0.2
+0.2
-3.4
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
+0.1
+0.2
-0.5
-3.2
nitrogen source
D-Alanine (N)
-0.2
-0.1
-0.4
-0.2
-2.5
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
-0.0
-0.5
-0.0
-2.8
carbon source
Octanoic (C)
-0.1
-0.3
+0.0
-0.2
-2.8
temperature
R2A 23C
-0.1
-0.4
-0.2
-0.6
-2.1
nitrogen source
L-Lysine (N)
+0.0
-0.0
+0.3
-0.2
-3.4
carbon source
succinate (C)
-0.2
+0.3
-0.0
-0.3
-3.2
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
-0.2
+0.2
+0.1
-3.2
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.1
-0.3
-0.1
-0.0
-2.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.8
+0.7
-0.1
-0.4
-2.4
nitrogen source
L-Serine (N)
-0.5
-0.1
-0.4
-0.4
-1.6
carbon source
Suberic (C)
+0.2
-0.1
+0.0
+0.0
-2.6
carbon source
Hexanoic (C)
+0.2
+0.5
-0.1
-0.1
-2.9
carbon source
Protocatechuic Acid (C)
-0.3
-0.1
+0.2
-0.5
-1.7
carbon source
L-Tryptophan (C)
-0.2
+0.1
+0.2
-0.5
-2.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.6
-0.0
-0.3
+0.8
-1.8
stress
R2A with Zinc 0.1 mM
-0.7
-1.0
-0.4
-0.5
+0.8
carbon source
L-Alanine (C)
+0.1
-0.2
+0.3
+0.4
-2.4
carbon source
pyruvate (C)
-0.2
+0.4
+0.2
+0.2
-1.9
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.7
-0.1
+0.4
-0.4
+1.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.3
-0.3
+0.3
+0.0
+1.8
stress
R2A with nitrate 200 mM
-0.2
-0.5
-0.2
+1.9
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
+0.5
+0.7
+0.5
+4.2
-4.0
stress
R2A with Lomefloxacin 0.001 mM
+0.2
-0.1
+0.3
+6.0
-1.2
stress
R2A with Sisomicin 0.035 mg/ml
+0.1
+0.0
+0.6
+10.3
-2.9
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.1
+0.3
+0.2
+11.5
-1.8
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