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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19835 and RR42_RS19840 are separated by 55 nucleotides
RR42_RS19840 and RR42_RS19845 are separated by 112 nucleotides
RR42_RS19845 and RR42_RS19850 are separated by 364 nucleotides
RR42_RS19850 and RR42_RS19855 are separated by 121 nucleotides
RR42_RS19835: RR42_RS19835 - MFS transporter, at 4,280,897 to 4,282,210
_RS19835
RR42_RS19840: RR42_RS19840 - amidohydrolase, at 4,282,266 to 4,283,477
_RS19840
RR42_RS19845: RR42_RS19845 - hypothetical protein, at 4,283,590 to 4,284,513
_RS19845
RR42_RS19850: RR42_RS19850 - glyoxylate carboligase, at 4,284,878 to 4,286,653
_RS19850
RR42_RS19855: RR42_RS19855 - hydroxypyruvate isomerase, at 4,286,775 to 4,287,557
_RS19855
Group
Condition
RR42
_RS19835
RR42
_RS19840
RR42
_RS19845
RR42
_RS19850
RR42
_RS19855
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.1
+0.5
-3.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-0.3
+0.1
-2.2
-0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.3
+0.0
-2.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.0
+0.2
-1.8
-0.5
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
-0.5
-0.2
-0.4
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.0
+0.5
+0.1
-2.1
-0.2
nitrogen source
Glucuronamide (N)
-0.3
+0.1
-0.2
-0.3
-0.7
nitrogen source
L-Serine (N)
-0.2
-0.6
-0.3
-0.0
-0.2
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.1
-0.4
-0.3
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
-0.5
+0.2
-0.5
-0.5
nitrogen source
L-Glutamine (N)
-0.3
+0.2
-0.2
-0.3
-0.4
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.1
+0.2
-0.6
-0.2
-0.0
stress
R2A with Cisplatin 0.001 mg/ml
+0.0
-0.1
+0.2
-0.4
-0.5
carbon source
Azelaic (C)
-0.4
+0.3
+0.2
-0.4
-0.4
nitrogen source
casaminos (N)
-0.2
+0.1
-0.3
-0.4
+0.2
carbon source
a-Ketoglutaric (C)
+0.1
-0.6
+0.3
-0.1
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+0.8
-0.2
-0.4
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
+0.2
+0.2
+0.2
-0.5
lb
LB
-0.1
-0.2
-0.2
+0.4
+0.3
stress
R2A with Sisomicin 0.035 mg/ml
+0.2
-0.5
+0.3
-0.0
+0.3
carbon source
pyruvate (C)
+0.2
+0.4
+0.2
-0.1
-0.3
carbon source
D-Gluconic Acid (C)
-0.0
+0.4
+0.1
+0.3
-0.3
carbon source
Protocatechuic Acid (C)
+0.3
-0.4
+0.4
+0.2
-0.0
stress
R2A with Bacitracin 0.5 mg/ml
+0.3
+0.0
-0.3
+0.2
+0.5
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.4
+0.3
+0.2
+0.4
carbon source
L-Glutamine (C)
+0.1
+0.7
+0.0
+0.1
-0.2
carbon source
L-Malic (C)
-0.0
+0.7
+0.3
-0.1
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
+0.4
+0.5
-0.1
+0.4
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
+0.4
+0.2
+0.1
+0.4
stress
R2A with Cobalt chloride 0.3 mM
-0.0
+0.2
+0.8
+0.1
+0.3
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