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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19685 and RR42_RS19690 are separated by 63 nucleotides
RR42_RS19690 and RR42_RS19695 are separated by 172 nucleotides
RR42_RS19695 and RR42_RS19700 are separated by 120 nucleotides
RR42_RS19700 and RR42_RS19705 are separated by 25 nucleotides
RR42_RS19685: RR42_RS19685 - thiosulfate oxidation carrier complex protein SoxZ, at 4,253,362 to 4,253,673
_RS19685
RR42_RS19690: RR42_RS19690 - Tat pathway signal protein, at 4,253,737 to 4,254,192
_RS19690
RR42_RS19695: RR42_RS19695 - cytochrome C protein, at 4,254,365 to 4,254,694
_RS19695
RR42_RS19700: RR42_RS19700 - cytochrome C, at 4,254,815 to 4,255,828
_RS19700
RR42_RS19705: RR42_RS19705 - sulfite dehydrogenase, at 4,255,854 to 4,257,218
_RS19705
Group
Condition
RR42
_RS19685
RR42
_RS19690
RR42
_RS19695
RR42
_RS19700
RR42
_RS19705
carbon source
D-Lactate (C)
-1.0
-0.5
-1.5
-0.3
-0.4
nitrogen source
L-Glutamine (N)
-0.4
-0.3
-1.7
-0.4
-0.5
carbon source
L-Malic (C)
-2.5
-0.2
-0.8
+0.2
+0.0
nitrogen source
nitrite (N)
-0.9
-0.9
-1.3
+0.0
+0.2
stress
R2A with copper (II) chloride 0.25 mM
-2.0
+0.1
+0.1
-0.3
-0.7
carbon source
D,L-Lactate (C)
-0.9
-0.7
-0.8
-0.2
-0.0
nitrogen source
L-Lysine (N)
-0.1
+0.3
-2.2
-0.6
+0.2
carbon source
L-Glutamine (C)
-0.7
-0.2
-1.5
+0.1
-0.1
carbon source
succinate (C)
+0.0
+0.1
-2.0
-0.4
+0.2
nitrogen source
nitrate (N)
-0.4
+0.1
-1.3
-0.7
+0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.7
-0.2
-2.9
+0.4
-0.1
carbon source
Octanoic (C)
+0.3
-0.2
-1.7
-0.8
+0.4
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
+0.0
-1.8
-0.3
+0.4
nitrogen source
L-Serine (N)
+0.7
-0.7
-0.9
-0.9
+0.0
stress
R2A with Zinc 0.1 mM
-1.5
-0.3
+0.5
-0.0
-0.3
carbon source
L-Phenylalanine (C)
-1.1
+0.3
-0.8
-0.1
+0.3
carbon source
D,L-Lactate (C)
+0.7
-0.1
-0.7
-0.8
+0.1
carbon source
Heptanoic (C)
+0.7
+0.2
-2.1
+0.5
-0.0
stress
R2A with Sisomicin 0.035 mg/ml
-1.7
-0.0
+0.8
+0.1
-0.0
stress
R2A with Chloride 300 mM
+0.5
-0.2
-1.5
+0.2
+0.3
lb
LB
+0.5
+0.9
+0.7
-0.2
-1.6
carbon source
propionate (C)
+1.1
-0.2
+0.5
-0.4
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.9
+2.9
-0.2
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
-0.3
+2.9
+0.1
-0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
+0.2
+2.7
+0.2
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
+0.2
+2.6
-0.2
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-0.3
+2.4
+0.1
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.2
-0.8
+2.1
+0.4
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+1.4
+0.2
+2.1
-0.0
-0.2
carbon source
Protocatechuic Acid (C)
+1.9
+0.5
+1.0
+0.1
+0.2
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