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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19655 and RR42_RS19660 are separated by 40 nucleotides
RR42_RS19660 and RR42_RS19665 are separated by 78 nucleotides
RR42_RS19665 and RR42_RS19670 are separated by 36 nucleotides
RR42_RS19670 and RR42_RS19675 are separated by 50 nucleotides
RR42_RS19655: RR42_RS19655 - tRNA-Ala, at 4,248,610 to 4,248,685
_RS19655
RR42_RS19660: RR42_RS19660 - 5'-nucleotidase, at 4,248,726 to 4,250,447
_RS19660
RR42_RS19665: RR42_RS19665 - alkyl hydroperoxide reductase, at 4,250,526 to 4,251,023
_RS19665
RR42_RS19670: RR42_RS19670 - SoxX protein, at 4,251,060 to 4,251,719
_RS19670
RR42_RS19675: RR42_RS19675 - SoxA protein, at 4,251,770 to 4,252,600
_RS19675
Group
Condition
RR42
_RS19655
RR42
_RS19660
RR42
_RS19665
RR42
_RS19670
RR42
_RS19675
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-3.5
+0.1
-0.3
-0.2
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-3.2
-0.1
+0.0
-0.2
-0.2
stress
R2A with copper (II) chloride 0.25 mM
-4.2
+0.4
+0.0
+0.1
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-2.5
+0.2
-0.3
-0.3
+0.5
stress
R2A with D-Cycloserine 0.5 mg/ml
-1.0
+0.0
-0.4
-0.5
-0.4
carbon source
Carbon source D,L-Lactate 10 mM
-1.9
-0.0
+0.0
-0.0
-0.1
nitrogen source
nitrite (N)
+0.0
-0.7
+0.4
-1.0
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-1.5
+0.0
-0.1
-0.1
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-1.1
-0.1
+0.1
-0.2
-0.1
carbon source
Suberic (C)
-1.1
-0.2
-0.1
+0.2
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.7
-0.0
+0.3
+0.1
-0.7
nitrogen source
L-Tryptophan (N)
-1.5
+0.1
+0.0
+0.2
+0.4
carbon source
L-Asparagine (C)
-0.8
+0.1
-0.3
+0.0
+0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-1.1
+0.3
-0.3
+0.3
+0.3
stress
R2A with Chloride 300 mM
-1.2
+0.2
+0.2
-0.1
+0.6
carbon source
adipate (C)
-1.5
+0.1
+0.3
+0.4
+0.3
lb
LB
+0.9
+0.1
+0.1
-0.4
-0.9
stress
R2A with Chloride 300 mM
-0.7
+0.2
-0.0
+0.3
+0.3
r2a
R2A
+0.9
-0.2
-0.2
+0.1
-0.4
nitrogen source
L-Threonine (N)
+0.5
+0.1
-0.3
-0.3
+0.5
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.7
+0.3
+0.2
+0.3
+0.6
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+1.1
-0.1
+0.2
-0.0
-0.2
carbon source
succinate (C)
+1.0
-0.1
-0.1
+0.0
+0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.7
+0.3
+0.1
+0.8
+0.8
nitrogen source
L-Phenylalanine (N)
+0.9
+0.1
+0.2
+0.2
-0.1
nitrogen source
L-Glutamine (N)
+0.9
-0.0
+0.4
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
+0.6
-0.1
+0.3
+0.3
carbon source
Protocatechuic Acid (C)
+1.1
+0.2
+0.0
+0.5
+0.0
stress
R2A with Cobalt chloride 0.3 mM
+1.2
+0.4
+0.2
+0.1
+0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.6
+0.8
+0.4
+0.4
+1.0
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RR42_RS19665
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