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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19540 and RR42_RS19545 are separated by 858 nucleotides
RR42_RS19545 and RR42_RS19550 are separated by 263 nucleotides
RR42_RS19550 and RR42_RS19555 are separated by 138 nucleotides
RR42_RS19555 and RR42_RS19560 are separated by 59 nucleotides
RR42_RS19540: RR42_RS19540 - branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (EC 1.2.7.7)
(from data)
, at 4,221,214 to 4,224,807
_RS19540
RR42_RS19545: RR42_RS19545 - hypothetical protein, at 4,225,666 to 4,226,232
_RS19545
RR42_RS19550: RR42_RS19550 - hypothetical protein, at 4,226,496 to 4,227,194
_RS19550
RR42_RS19555: RR42_RS19555 - hypothetical protein, at 4,227,333 to 4,227,704
_RS19555
RR42_RS19560: RR42_RS19560 - hypothetical protein, at 4,227,764 to 4,228,375
_RS19560
Group
Condition
RR42
_RS19540
RR42
_RS19545
RR42
_RS19550
RR42
_RS19555
RR42
_RS19560
nitrogen source
Glucuronamide (N)
-0.2
-0.1
-0.3
-1.1
-0.2
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
-0.2
-0.2
-0.4
-0.9
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.1
-0.1
-1.6
+0.2
carbon source
succinate (C)
+0.0
+0.1
-0.3
-1.1
-0.4
nitrogen source
L-Valine (N)
-1.0
+0.3
-0.1
-0.7
-0.1
carbon source
Dodecandioic (C)
+0.0
-0.4
-0.2
-0.6
-0.4
carbon source
L-Asparagine (C)
-0.1
+0.3
-0.2
-0.8
-0.5
carbon source
L-Leucine (C)
+0.2
-0.0
-0.1
-0.8
-0.6
carbon source
Valeric (C)
-0.1
-0.2
+0.4
-0.5
-0.8
carbon source
D-Lactate (C)
-0.1
+0.2
-0.2
-0.8
-0.2
carbon source
adipate (C)
+0.1
-0.4
+0.1
-0.5
-0.4
nitrogen source
L-Valine (N)
-1.1
-0.1
-0.4
+0.3
+0.3
nitrogen source
L-Glutamine (N)
-0.3
-0.3
+0.4
-1.0
+0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
-0.3
+0.3
-0.9
-0.1
carbon source
L-Threonine (C)
+0.1
+0.3
-0.3
-0.9
+0.1
lb
LB
+0.2
+0.8
-0.4
-0.9
-0.4
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.1
-0.4
+0.2
-0.6
+0.3
carbon source
L-Malic (C)
+0.1
-0.2
+0.2
-1.1
+0.4
stress
R2A with copper (II) chloride 0.25 mM
-0.0
+0.6
-0.3
-0.6
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-0.3
-0.1
+0.5
-0.7
carbon source
Octanoic (C)
+0.0
-0.3
-0.4
+1.0
-0.7
carbon source
Heptanoic (C)
-0.3
-0.3
-0.3
+0.7
+0.0
stress
R2A with Cobalt chloride 0.5 mM
-0.1
+0.6
+0.2
-0.9
+0.1
stress
R2A with Zinc 0.1 mM
-0.3
-0.2
-0.2
+0.7
+0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-0.4
+0.6
+0.2
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
-0.2
-0.4
+0.7
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.4
+0.0
+0.6
+0.4
stress
R2A with nitrate 200 mM
+0.1
+0.2
-0.3
+0.6
+0.4
carbon source
Protocatechuic Acid (C)
+0.3
+0.9
+0.2
+0.1
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
+0.1
+0.4
+0.1
+1.5
+0.1
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