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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19500 and RR42_RS19505 are separated by 392 nucleotides
RR42_RS19505 and RR42_RS19510 are separated by 14 nucleotides
RR42_RS19510 and RR42_RS19515 overlap by 1 nucleotides
RR42_RS19515 and RR42_RS19520 are separated by 53 nucleotides
RR42_RS19500: RR42_RS19500 - general secretion pathway protein GspK, at 4,209,356 to 4,210,351
_RS19500
RR42_RS19505: RR42_RS19505 - general secretion pathway protein GspL, at 4,210,744 to 4,212,153
_RS19505
RR42_RS19510: RR42_RS19510 - general secretion pathway protein GspM, at 4,212,168 to 4,212,794
_RS19510
RR42_RS19515: RR42_RS19515 - general secretion pathway protein GspN, at 4,212,794 to 4,213,633
_RS19515
RR42_RS19520: RR42_RS19520 - general secretion pathway protein GspD, at 4,213,687 to 4,216,116
_RS19520
Group
Condition
RR42
_RS19500
RR42
_RS19505
RR42
_RS19510
RR42
_RS19515
RR42
_RS19520
stress
R2A with copper (II) chloride 0.25 mM
-2.0
-1.6
-2.9
-1.9
-1.6
carbon source
adipate (C)
-2.0
-1.3
-1.6
-1.1
-1.2
stress
R2A with A22 0.01 mg/ml
-1.3
-1.1
-1.8
-1.3
-1.0
carbon source
adipate (C)
-1.6
-1.0
-1.4
-0.9
-1.3
carbon source
Octanoic (C)
-1.3
-1.5
-0.6
-1.6
-1.1
stress
R2A with Lomefloxacin 0.00075 mM
-0.6
-1.2
-0.6
-1.3
-0.9
carbon source
Octanoic (C)
-1.2
-0.6
-1.0
-0.9
-0.8
carbon source
Pimelic (C)
-1.1
-0.4
-1.0
-1.1
-0.8
carbon source
Protocatechuic Acid (C)
-1.0
-1.2
-0.2
-0.9
-0.8
stress
R2A with Cobalt chloride 0.5 mM
-0.8
-0.9
-0.9
-0.9
-0.3
carbon source
Pimelic (C)
-0.8
-0.5
-0.6
-1.0
-0.8
carbon source
Dodecandioic (C)
-0.5
-0.5
-1.2
-0.9
-0.6
carbon source
Protocatechuic Acid (C)
-0.9
-1.3
-0.2
-0.5
-0.8
carbon source
Dodecandioic (C)
-0.9
-0.8
-0.5
-0.5
-0.4
nitrogen source
casaminos (N)
-0.7
-1.3
-0.2
-0.1
-0.3
carbon source
Suberic (C)
-0.8
-0.0
-0.7
-0.7
-0.3
carbon source
Disodium Glutarate (C)
-0.6
-0.4
-0.6
-0.4
-0.4
carbon source
Heptanoic (C)
-0.4
-0.2
-0.8
-0.5
-0.5
stress
R2A with Lomefloxacin 0.001 mM
-0.0
-0.0
-1.2
-0.6
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.6
-0.4
-0.4
-0.3
-0.5
carbon source
Azelaic (C)
-0.3
-0.2
-0.0
-1.2
-0.3
carbon source
Suberic (C)
-0.6
-0.4
+0.2
-0.6
-0.5
stress
R2A with Nickel (II) chloride 0.25 mM
+0.3
+0.8
+0.3
+0.4
+0.5
nitrogen source
D-Alanine (N)
+0.6
+0.5
-0.0
+0.6
+0.7
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
+0.3
+0.8
+0.7
+0.5
stress
R2A with nitrate 150 mM
+0.4
+0.4
+0.5
+0.8
+0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.6
+0.5
+0.9
+0.3
+0.6
stress
R2A with nitrate 200 mM
+0.4
+0.5
+0.9
+0.7
+0.8
stress
R2A with Vancomycin 0.5 mg/ml
+6.6
+6.4
+6.4
+6.0
+6.6
stress
R2A with Vancomycin 0.5 mg/ml
+7.1
+7.2
+7.1
+7.0
+7.3
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