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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19450 and RR42_RS19455 are separated by 10 nucleotides
RR42_RS19455 and RR42_RS19460 are separated by 417 nucleotides
RR42_RS19460 and RR42_RS19465 are separated by 81 nucleotides
RR42_RS19465 and RR42_RS19470 are separated by 399 nucleotides
RR42_RS19450: RR42_RS19450 - potassium transporter KefC, at 4,201,067 to 4,202,881
_RS19450
RR42_RS19455: RR42_RS19455 - NAD(P)H dehydrogenase, at 4,202,892 to 4,203,473
_RS19455
RR42_RS19460: RR42_RS19460 - GCN5 family acetyltransferase, at 4,203,891 to 4,204,589
_RS19460
RR42_RS19465: RR42_RS19465 - AsnC family transcriptional regulator, at 4,204,671 to 4,205,162
_RS19465
RR42_RS19470: RR42_RS19470 - hypothetical protein, at 4,205,562 to 4,206,134
_RS19470
Group
Condition
RR42
_RS19450
RR42
_RS19455
RR42
_RS19460
RR42
_RS19465
RR42
_RS19470
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.7
-0.1
-2.7
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.2
-0.4
+0.3
-2.4
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
-0.1
-0.1
-1.1
-0.4
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
+0.0
-0.9
-0.1
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-0.1
-0.5
-0.8
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
+0.2
-0.9
-0.0
-0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.1
-0.4
-0.6
-0.3
+0.1
lb
LB
+0.1
+0.9
-1.7
-0.1
-0.3
carbon source
adipate (C)
+0.2
-0.2
-0.0
-0.8
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-0.2
+0.1
-0.9
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
-0.1
+0.4
-0.8
-0.4
carbon source
Dodecandioic (C)
-0.5
-0.5
-0.1
-0.1
+0.4
carbon source
adipate (C)
+0.1
-0.3
+0.1
-1.0
+0.4
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
-0.1
-0.4
-0.4
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.2
+0.2
-0.6
+0.4
-0.5
carbon source
succinate (C)
+0.2
+0.2
-0.4
+0.2
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.5
-0.2
+0.1
-0.4
-0.2
carbon source
Protocatechuic Acid (C)
+0.3
+0.1
+0.4
-0.2
-0.4
carbon source
Octanoic (C)
+0.4
+0.1
-0.3
+0.3
-0.2
carbon source
L-Tryptophan (C)
-0.1
+0.1
-0.1
+0.9
-0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.2
-0.2
+1.0
-0.2
-0.1
carbon source
L-Proline (C)
-0.1
+0.0
-0.1
+1.0
-0.0
nitrogen source
L-Tryptophan (N)
+0.0
-0.2
+0.3
+0.7
-0.0
nitrogen source
L-Leucine (N)
+0.1
-0.1
-0.3
+1.0
+0.2
carbon source
Disodium Glutarate (C)
+0.1
+0.1
+0.3
-0.2
+0.6
carbon source
L-Tryptophan (C)
-0.0
+0.2
-0.2
+0.8
+0.1
nitrogen source
L-Tryptophan (N)
+0.2
-0.3
+0.5
+0.7
-0.1
nitrogen source
D-Alanine (N)
+0.2
+0.0
+0.2
+1.2
-0.6
carbon source
L-Leucine (C)
+0.1
+0.2
+0.1
+0.9
+0.0
nitrogen source
D-Alanine (N)
-0.2
-0.1
+0.1
+1.4
+0.1
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