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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19290 and RR42_RS19295 are separated by 77 nucleotides
RR42_RS19295 and RR42_RS19300 are separated by 119 nucleotides
RR42_RS19300 and RR42_RS19305 are separated by 226 nucleotides
RR42_RS19305 and RR42_RS19310 are separated by 355 nucleotides
RR42_RS19290: RR42_RS19290 - elongation factor Tu, at 4,164,101 to 4,165,291
_RS19290
RR42_RS19295: RR42_RS19295 - elongation factor G, at 4,165,369 to 4,167,471
_RS19295
RR42_RS19300: RR42_RS19300 - 30S ribosomal protein S7, at 4,167,591 to 4,168,061
_RS19300
RR42_RS19305: RR42_RS19305 - 30S ribosomal protein S12, at 4,168,288 to 4,168,665
_RS19305
RR42_RS19310: RR42_RS19310 - ATP-dependent DNA helicase RecQ, at 4,169,021 to 4,170,886
_RS19310
Group
Condition
RR42
_RS19290
RR42
_RS19295
RR42
_RS19300
RR42
_RS19305
RR42
_RS19310
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
N.D.
N.D.
N.D.
-2.5
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
N.D.
N.D.
N.D.
-1.8
lb
LB
N.D.
N.D.
N.D.
N.D.
-0.8
stress
R2A with nitrate 150 mM
N.D.
N.D.
N.D.
N.D.
-0.6
carbon source
L-Histidine (C)
N.D.
N.D.
N.D.
N.D.
-0.6
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
L-Glutamine (C)
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
L-Histidine (C)
N.D.
N.D.
N.D.
N.D.
-0.4
stress
R2A with sodium fluoride 100 mM
N.D.
N.D.
N.D.
N.D.
-0.4
nitrogen source
L-Valine (N)
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
L-Leucine (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
succinate (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
L-Asparagine (C)
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
N.D.
N.D.
N.D.
-0.3
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
L-Glutamine (C)
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with Chloride 300 mM
N.D.
N.D.
N.D.
N.D.
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
L-Leucine (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
N.D.
N.D.
-0.3
nitrogen source
D-Alanine (N)
N.D.
N.D.
N.D.
N.D.
-0.3
nitrogen source
L-Glutamine (N)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
Ethanol (C)
N.D.
N.D.
N.D.
N.D.
-0.3
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
Dodecandioic (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with Cobalt chloride 0.5 mM
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with Lomefloxacin 0.00075 mM
N.D.
N.D.
N.D.
N.D.
+1.4
stress
R2A with Lomefloxacin 0.001 mM
N.D.
N.D.
N.D.
N.D.
+2.4
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