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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19110 and RR42_RS19115 are separated by 117 nucleotides
RR42_RS19115 and RR42_RS19120 are separated by 159 nucleotides
RR42_RS19120 and RR42_RS19125 are separated by 161 nucleotides
RR42_RS19125 and RR42_RS19130 are separated by 182 nucleotides
RR42_RS19110: RR42_RS19110 - thiol:disulfide interchange protein, at 4,141,210 to 4,143,153
_RS19110
RR42_RS19115: RR42_RS19115 - cation tolerance protein CutA, at 4,143,271 to 4,143,615
_RS19115
RR42_RS19120: RR42_RS19120 - 50S ribosomal protein L17, at 4,143,775 to 4,144,170
_RS19120
RR42_RS19125: RR42_RS19125 - DNA-directed RNA polymerase subunit alpha, at 4,144,332 to 4,145,312
_RS19125
RR42_RS19130: RR42_RS19130 - 30S ribosomal protein S4, at 4,145,495 to 4,146,118
_RS19130
Group
Condition
RR42
_RS19110
RR42
_RS19115
RR42
_RS19120
RR42
_RS19125
RR42
_RS19130
stress
R2A with Cisplatin 0.001 mg/ml
N.D.
-0.7
N.D.
N.D.
N.D.
nitrogen source
L-Tryptophan (N)
N.D.
-0.6
N.D.
N.D.
N.D.
carbon source
D-Lactate (C)
N.D.
-0.5
N.D.
N.D.
N.D.
nitrogen source
L-Glutamine (N)
N.D.
-0.5
N.D.
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
N.D.
-0.5
N.D.
N.D.
N.D.
nitrogen source
nitrate (N)
N.D.
-0.5
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.3 mM
N.D.
-0.4
N.D.
N.D.
N.D.
stress
R2A with Paraquat dichloride 0.064 mg/ml
N.D.
-0.4
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
-0.4
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
-0.4
N.D.
N.D.
N.D.
carbon source
Azelaic (C)
N.D.
-0.3
N.D.
N.D.
N.D.
nitrogen source
nitrite (N)
N.D.
-0.3
N.D.
N.D.
N.D.
carbon source
L-Asparagine (C)
N.D.
-0.3
N.D.
N.D.
N.D.
nitrogen source
L-Phenylalanine (N)
N.D.
-0.3
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
N.D.
-0.3
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
N.D.
-0.3
N.D.
N.D.
N.D.
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
Octanoic (C)
N.D.
+0.3
N.D.
N.D.
N.D.
nitrogen source
L-Asparagine (N)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
Pimelic (C)
N.D.
+0.3
N.D.
N.D.
N.D.
carbon source
L-Leucine (C)
N.D.
+0.4
N.D.
N.D.
N.D.
stress
R2A with nitrate 200 mM
N.D.
+0.4
N.D.
N.D.
N.D.
stress
R2A with Chlorite 4 mM
N.D.
+0.4
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
+0.4
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
N.D.
+0.5
N.D.
N.D.
N.D.
stress
R2A with Cobalt chloride 0.5 mM
N.D.
+0.5
N.D.
N.D.
N.D.
carbon source
Suberic (C)
N.D.
+0.5
N.D.
N.D.
N.D.
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
+0.6
N.D.
N.D.
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
N.D.
+0.6
N.D.
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
N.D.
+0.6
N.D.
N.D.
N.D.
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