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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19085 and RR42_RS19090 are separated by 158 nucleotides
RR42_RS19090 and RR42_RS19095 are separated by 570 nucleotides
RR42_RS19095 and RR42_RS19100 are separated by 330 nucleotides
RR42_RS19100 and RR42_RS19105 are separated by 10 nucleotides
RR42_RS19085: RR42_RS19085 - cytochrome C biogenesis protein ResB, at 4,134,242 to 4,136,428
_RS19085
RR42_RS19090: RR42_RS19090 - cytochrome C, at 4,136,587 to 4,137,246
_RS19090
RR42_RS19095: RR42_RS19095 - GTP-binding protein, at 4,137,817 to 4,138,563
_RS19095
RR42_RS19100: RR42_RS19100 - delta-aminolevulinic acid dehydratase, at 4,138,894 to 4,139,886
_RS19100
RR42_RS19105: RR42_RS19105 - magnesium transporter, at 4,139,897 to 4,141,165
_RS19105
Group
Condition
RR42
_RS19085
RR42
_RS19090
RR42
_RS19095
RR42
_RS19100
RR42
_RS19105
nitrogen source
L-Lysine (N)
-1.9
-3.2
N.D.
N.D.
+0.1
nitrogen source
L-Isoleucine (N)
+0.4
-4.7
N.D.
N.D.
-0.0
stress
R2A with copper (II) chloride 0.25 mM
-1.0
-3.2
N.D.
N.D.
+0.0
carbon source
adipate (C)
-1.0
-3.0
N.D.
N.D.
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-4.3
+0.2
N.D.
N.D.
+0.1
carbon source
L-Leucine (C)
-1.9
-1.9
N.D.
N.D.
-0.1
carbon source
succinate (C)
-0.9
-2.9
N.D.
N.D.
-0.1
carbon source
D-Lactate (C)
-1.4
-2.4
N.D.
N.D.
-0.0
carbon source
L-Leucine (C)
-1.8
-1.9
N.D.
N.D.
-0.1
lb
LB
-3.8
+0.1
N.D.
N.D.
-0.0
carbon source
Octanoic (C)
-0.5
-3.3
N.D.
N.D.
+0.0
carbon source
adipate (C)
-0.8
-2.7
N.D.
N.D.
-0.2
stress
R2A with Chloride 300 mM
-2.2
-1.6
N.D.
N.D.
+0.2
carbon source
a-Ketoglutaric (C)
-0.6
-3.0
N.D.
N.D.
-0.0
carbon source
butyrate (C)
-2.0
-1.4
N.D.
N.D.
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
-2.3
-1.4
N.D.
N.D.
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
-3.5
N.D.
N.D.
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-2.6
-0.9
N.D.
N.D.
+0.1
carbon source
Dodecandioic (C)
+0.2
-3.4
N.D.
N.D.
-0.1
carbon source
pyruvate (C)
-1.2
-2.0
N.D.
N.D.
+0.1
nitrogen source
L-Tryptophan (N)
-1.5
-1.6
N.D.
N.D.
+0.2
carbon source
Pimelic (C)
+0.3
-3.3
N.D.
N.D.
+0.0
carbon source
Octanoic (C)
+0.6
-3.4
N.D.
N.D.
+0.0
carbon source
Disodium Glutarate (C)
+0.6
-3.4
N.D.
N.D.
+0.1
carbon source
Pimelic (C)
+0.8
-3.4
N.D.
N.D.
+0.2
carbon source
L-Tryptophan (C)
+0.3
-2.8
N.D.
N.D.
+0.1
carbon source
Disodium Glutarate (C)
+0.9
-3.4
N.D.
N.D.
+0.1
carbon source
Heptanoic (C)
+1.0
-3.4
N.D.
N.D.
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-2.4
+2.3
N.D.
N.D.
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-1.6
+2.0
N.D.
N.D.
-0.0
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