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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS19005 and RR42_RS19010 overlap by 14 nucleotides
RR42_RS19010 and RR42_RS19015 are separated by 246 nucleotides
RR42_RS19015 and RR42_RS19020 overlap by 4 nucleotides
RR42_RS19020 and RR42_RS19025 overlap by 4 nucleotides
RR42_RS19005: RR42_RS19005 - 3-dehydroquinate synthase, at 4,116,964 to 4,118,070
_RS19005
RR42_RS19010: RR42_RS19010 - shikimate kinase, at 4,118,057 to 4,118,671
_RS19010
RR42_RS19015: RR42_RS19015 - secretin, at 4,118,918 to 4,121,092
_RS19015
RR42_RS19020: RR42_RS19020 - pilus assembly protein PilP, at 4,121,089 to 4,121,622
_RS19020
RR42_RS19025: RR42_RS19025 - pilus assembly protein PilO, at 4,121,619 to 4,122,299
_RS19025
Group
Condition
RR42
_RS19005
RR42
_RS19010
RR42
_RS19015
RR42
_RS19020
RR42
_RS19025
carbon source
D-Gluconic Acid (C)
-6.0
-4.7
+0.1
-0.1
-0.5
carbon source
4-Hydroxybenzoic Acid (C)
-5.8
-4.9
-0.2
-0.1
-0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-6.5
-4.8
+0.1
+0.2
+0.1
nitrogen source
nitrite (N)
-6.4
-4.3
+0.0
+0.0
-0.1
carbon source
succinate (C)
-5.9
-4.6
-0.1
+0.2
-0.2
nitrogen source
L-Threonine (N)
-5.6
-4.8
-0.1
+0.1
-0.2
nitrogen source
L-Tryptophan (N)
-6.4
-3.8
+0.0
-0.0
-0.4
carbon source
L-Lactate (C)
-5.9
-4.7
+0.1
+0.2
-0.1
carbon source
pyruvate (C)
-5.8
-4.9
+0.1
+0.1
+0.3
carbon source
a-Ketoglutaric (C)
-6.0
-4.1
-0.0
-0.0
-0.1
carbon source
succinate (C)
-5.3
-4.9
+0.1
-0.0
+0.0
nitrogen source
D-Alanine (N)
-6.3
-4.1
+0.0
+0.1
+0.1
carbon source
Azelaic (C)
-5.8
-3.9
-0.1
-0.1
-0.1
carbon source
L-Threonine (C)
-5.8
-4.5
+0.1
+0.1
+0.2
carbon source
D-Lactate (C)
-5.1
-4.7
+0.0
+0.0
+0.0
carbon source
L-Asparagine (C)
-5.7
-4.4
+0.1
+0.1
+0.1
nitrogen source
L-Tryptophan (N)
-6.0
-4.0
-0.0
+0.1
+0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-5.7
-4.1
+0.0
+0.0
-0.0
carbon source
Carbon source D,L-Lactate 10 mM
-5.3
-4.3
-0.1
+0.1
-0.0
nitrogen source
L-Leucine (N)
-6.3
-3.5
-0.0
-0.1
+0.4
carbon source
L-Lactate (C)
-5.4
-4.4
+0.0
+0.2
-0.1
nitrogen source
L-Glutamine (N)
-5.4
-4.5
+0.2
-0.1
+0.2
carbon source
L-Malic (C)
-5.3
-4.3
-0.1
+0.0
+0.2
carbon source
pyruvate (C)
-4.7
-4.6
+0.1
+0.1
-0.3
carbon source
Dodecandioic (C)
-5.8
-3.9
+0.2
+0.0
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
-5.6
-4.0
+0.1
+0.1
+0.1
carbon source
D-Lactate (C)
-5.4
-4.2
+0.2
+0.1
+0.0
carbon source
Octanoic (C)
-5.6
-3.8
+0.1
-0.1
+0.1
carbon source
D,L-Lactate (C)
-4.8
-4.7
+0.1
+0.2
-0.0
carbon source
L-Proline (C)
-6.2
-3.2
-0.1
+0.3
+0.1
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