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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18970 and RR42_RS18975 are separated by 152 nucleotides
RR42_RS18975 and RR42_RS18980 are separated by 228 nucleotides
RR42_RS18980 and RR42_RS18985 are separated by 93 nucleotides
RR42_RS18985 and RR42_RS18990 are separated by 133 nucleotides
RR42_RS18970: RR42_RS18970 - toluene ABC transporter ATP-binding protein, at 4,105,215 to 4,106,036
_RS18970
RR42_RS18975: RR42_RS18975 - ABC transporter substrate-binding protein, at 4,106,189 to 4,107,292
_RS18975
RR42_RS18980: RR42_RS18980 - GCN5 family acetyltransferase, at 4,107,521 to 4,108,057
_RS18980
RR42_RS18985: RR42_RS18985 - glutamate synthase, at 4,108,151 to 4,109,614
_RS18985
RR42_RS18990: RR42_RS18990 - glutamate synthase, at 4,109,748 to 4,114,529
_RS18990
Group
Condition
RR42
_RS18970
RR42
_RS18975
RR42
_RS18980
RR42
_RS18985
RR42
_RS18990
carbon source
Octanoic (C)
-6.0
+0.1
-0.2
-3.0
-3.8
carbon source
Heptanoic (C)
-5.2
+0.1
-0.3
-3.3
-3.5
nitrogen source
Glycine (N)
-5.0
-0.0
+0.1
-3.1
-4.0
carbon source
Heptanoic (C)
-5.4
+0.1
-0.6
-2.5
-3.6
carbon source
Octanoic (C)
-5.3
+0.1
-0.4
-2.7
-3.4
carbon source
Dodecandioic (C)
-2.6
+0.0
-0.3
-3.3
-3.7
carbon source
Dodecandioic (C)
-2.4
+0.1
-0.3
-2.7
-3.7
carbon source
D-Gluconic Acid (C)
-1.9
+0.1
+0.3
-3.2
-4.1
nitrogen source
L-Threonine (N)
-0.5
-0.0
-0.5
-3.6
-4.0
carbon source
Azelaic (C)
-0.8
-0.2
-0.7
-2.8
-3.9
carbon source
succinate (C)
-1.2
+0.1
-0.2
-3.4
-3.5
nitrogen source
L-Lysine (N)
-0.1
+0.0
-0.2
-3.8
-4.2
nitrogen source
D-Alanine (N)
-1.2
+0.1
-0.2
-2.9
-4.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-4.9
+0.0
-0.2
-2.1
-0.9
carbon source
Suberic (C)
-1.3
+0.0
-0.2
-2.7
-3.7
carbon source
Disodium Glutarate (C)
-1.8
+0.0
-0.8
-2.5
-2.8
carbon source
D,L-Lactate (C)
-0.8
+0.1
-0.7
-2.8
-3.7
nitrogen source
nitrite (N)
-0.6
+0.0
-0.0
-3.4
-3.9
nitrogen source
L-Tryptophan (N)
-0.7
-0.1
-0.1
-3.1
-3.8
carbon source
D-Lactate (C)
-0.1
+0.1
-0.4
-3.4
-4.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.6
-0.2
-0.1
-2.6
-3.3
carbon source
Hexanoic (C)
-2.5
-0.1
-0.0
-2.4
-2.7
nitrogen source
L-Tryptophan (N)
-0.6
+0.1
+0.0
-3.3
-3.8
carbon source
Hexanoic (C)
-2.5
-0.0
+0.2
-2.5
-2.6
carbon source
adipate (C)
-1.4
+0.2
-0.9
-2.3
-3.0
carbon source
Suberic (C)
-1.0
+0.1
-0.4
-2.6
-3.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-1.8
-0.3
+0.4
-2.2
-3.3
carbon source
pyruvate (C)
-0.7
+0.2
+0.1
-3.0
-3.8
nitrogen source
nitrate (N)
-0.5
+0.1
+0.2
-3.1
-3.7
nitrogen source
L-Serine (N)
-0.4
+0.2
+0.3
-3.2
-3.9
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