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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18880 and RR42_RS18885 are separated by 15 nucleotides
RR42_RS18885 and RR42_RS18890 are separated by 78 nucleotides
RR42_RS18890 and RR42_RS18895 are separated by 89 nucleotides
RR42_RS18895 and RR42_RS18900 overlap by 4 nucleotides
RR42_RS18880: RR42_RS18880 - phosphoribosyl-AMP cyclohydrolase, at 4,090,599 to 4,091,006
_RS18880
RR42_RS18885: RR42_RS18885 - imidazole glycerol phosphate synthase, at 4,091,022 to 4,091,792
_RS18885
RR42_RS18890: RR42_RS18890 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 4,091,871 to 4,092,617
_RS18890
RR42_RS18895: RR42_RS18895 - imidazole glycerol phosphate synthase, at 4,092,707 to 4,093,360
_RS18895
RR42_RS18900: RR42_RS18900 - membrane protein, at 4,093,357 to 4,093,980
_RS18900
Group
Condition
RR42
_RS18880
RR42
_RS18885
RR42
_RS18890
RR42
_RS18895
RR42
_RS18900
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
N.D.
N.D.
N.D.
N.D.
-2.0
stress
R2A with Nickel (II) chloride 0.5 mM
N.D.
N.D.
N.D.
N.D.
-1.1
carbon source
Octanoic (C)
N.D.
N.D.
N.D.
N.D.
-0.7
stress
R2A with Cobalt chloride 0.5 mM
N.D.
N.D.
N.D.
N.D.
-0.6
carbon source
L-Proline (C)
N.D.
N.D.
N.D.
N.D.
-0.6
carbon source
Octanoic (C)
N.D.
N.D.
N.D.
N.D.
-0.6
nitrogen source
L-Valine (N)
N.D.
N.D.
N.D.
N.D.
-0.5
nitrogen source
L-Valine (N)
N.D.
N.D.
N.D.
N.D.
-0.5
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
N.D.
N.D.
-0.5
nitrogen source
Glycine (N)
N.D.
N.D.
N.D.
N.D.
-0.5
stress
R2A with Bacitracin 0.5 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
Azelaic (C)
N.D.
N.D.
N.D.
N.D.
-0.4
stress
R2A with nitrate 150 mM
N.D.
N.D.
N.D.
N.D.
-0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.4
stress
R2A with Nickel (II) chloride 0.25 mM
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
adipate (C)
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
L-Phenylalanine (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
Suberic (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
adipate (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
Suberic (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
Disodium Glutarate (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
N.D.
N.D.
N.D.
-0.3
stress
R2A with nitrate 200 mM
N.D.
N.D.
N.D.
N.D.
-0.3
nitrogen source
D-Alanine (N)
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.3
carbon source
Protocatechuic Acid (C)
N.D.
N.D.
N.D.
N.D.
+0.4
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