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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18850 and RR42_RS18855 are separated by 130 nucleotides
RR42_RS18855 and RR42_RS18860 are separated by 151 nucleotides
RR42_RS18860 and RR42_RS18865 are separated by 163 nucleotides
RR42_RS18865 and RR42_RS18870 are separated by 71 nucleotides
RR42_RS18850: RR42_RS18850 - preprotein translocase subunit TatC, at 4,087,372 to 4,088,169
_RS18850
RR42_RS18855: RR42_RS18855 - preprotein translocase, at 4,088,300 to 4,088,809
_RS18855
RR42_RS18860: RR42_RS18860 - protein translocase TatA, at 4,088,961 to 4,089,197
_RS18860
RR42_RS18865: RR42_RS18865 - hydrolase, at 4,089,361 to 4,089,717
_RS18865
RR42_RS18870: RR42_RS18870 - membrane protein, at 4,089,789 to 4,090,163
_RS18870
Group
Condition
RR42
_RS18850
RR42
_RS18855
RR42
_RS18860
RR42
_RS18865
RR42
_RS18870
nitrogen source
nitrite (N)
-5.8
-3.6
N.D.
-0.3
-0.0
stress
R2A with Bacitracin 0.5 mg/ml
-5.4
-3.9
N.D.
-0.3
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-5.0
-4.2
N.D.
-0.2
+0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-4.0
-4.2
N.D.
-0.5
-0.3
carbon source
a-Ketoglutaric (C)
-4.0
-3.9
N.D.
-0.1
-0.1
stress
R2A with Cobalt chloride 0.3 mM
-4.3
-3.9
N.D.
+0.2
+0.2
carbon source
Ethanol (C)
-3.3
-4.2
N.D.
-0.1
-0.0
stress
R2A with Chloride 300 mM
-3.7
-3.6
N.D.
-0.1
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
-2.6
-4.8
N.D.
-0.1
-0.1
carbon source
Ethanol (C)
-3.5
-3.9
N.D.
+0.0
-0.2
carbon source
L-Leucine (C)
-4.0
-3.5
N.D.
-0.0
-0.1
stress
R2A with Cobalt chloride 0.5 mM
-4.0
-3.5
N.D.
-0.0
+0.1
nitrogen source
L-Glutamine (N)
-3.4
-3.4
N.D.
-0.1
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-3.7
-3.4
N.D.
+0.0
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-2.6
-4.2
N.D.
-0.2
+0.0
stress
R2A with Chloride 300 mM
-3.3
-3.6
N.D.
+0.1
-0.1
carbon source
L-Glutamine (C)
-2.9
-3.7
N.D.
-0.0
-0.1
nitrogen source
D-Alanine (N)
-3.9
-2.6
N.D.
-0.1
-0.2
carbon source
Trisodium citrate (C)
-2.6
-4.0
N.D.
-0.1
+0.1
lb
LB
-5.0
-2.1
N.D.
+0.8
-0.4
carbon source
4-Hydroxybenzoic Acid (C)
-2.5
-3.9
N.D.
-0.1
-0.1
nitrogen source
L-Lysine (N)
-3.5
-2.8
N.D.
-0.1
+0.1
carbon source
succinate (C)
-4.5
-1.8
N.D.
+0.1
-0.1
carbon source
a-Ketoglutaric (C)
-2.3
-4.2
N.D.
+0.0
+0.2
nitrogen source
L-Tryptophan (N)
-3.1
-3.0
N.D.
-0.1
-0.0
carbon source
L-Tryptophan (C)
-2.1
-4.0
N.D.
-0.0
-0.1
carbon source
D-Lactate (C)
-2.2
-3.6
N.D.
+0.0
-0.2
carbon source
D-Lactate (C)
-3.4
-2.6
N.D.
+0.0
-0.1
carbon source
L-Leucine (C)
-2.6
-3.2
N.D.
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-3.6
-2.1
N.D.
+0.3
-0.1
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