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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18500 and RR42_RS18505 are separated by 38 nucleotides
RR42_RS18505 and RR42_RS18510 are separated by 179 nucleotides
RR42_RS18510 and RR42_RS18515 are separated by 102 nucleotides
RR42_RS18515 and RR42_RS18520 are separated by 50 nucleotides
RR42_RS18500: RR42_RS18500 - aldehyde dehydrogenase, at 4,003,206 to 4,004,684
_RS18500
RR42_RS18505: RR42_RS18505 - saccharopine dehydrogenase, at 4,004,723 to 4,005,928
_RS18505
RR42_RS18510: RR42_RS18510 - AsnC family transcriptional regulator, at 4,006,108 to 4,006,557
_RS18510
RR42_RS18515: RR42_RS18515 - dihydrodipicolinate reductase, at 4,006,660 to 4,007,469
_RS18515
RR42_RS18520: RR42_RS18520 - hypothetical protein, at 4,007,520 to 4,008,188
_RS18520
Group
Condition
RR42
_RS18500
RR42
_RS18505
RR42
_RS18510
RR42
_RS18515
RR42
_RS18520
nitrogen source
L-Lysine (N)
-1.2
-3.6
-4.6
+0.1
+0.5
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
-0.3
-0.6
+0.2
-1.3
stress
R2A with Cobalt chloride 0.5 mM
-0.6
-0.2
-0.5
-0.1
-0.9
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.0
+0.2
-0.3
-0.0
-2.0
lb
LB
+0.4
+0.0
-0.7
+0.3
-2.0
carbon source
adipate (C)
-0.4
-0.1
-0.4
-0.1
-0.8
carbon source
Azelaic (C)
-0.3
-0.1
-0.3
-0.1
-0.8
carbon source
Protocatechuic Acid (C)
-0.2
+0.0
-0.4
+0.2
-1.3
stress
R2A with Chlorite 4 mM
-0.5
+0.1
-0.3
-0.1
-0.8
nitrogen source
L-Glutamine (N)
-0.5
+0.4
-0.5
-0.1
-0.7
carbon source
Protocatechuic Acid (C)
+0.1
+0.1
-0.8
-0.2
-0.6
carbon source
Valeric (C)
-0.1
+0.1
-0.4
-0.1
-1.0
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
+0.5
+0.1
+0.1
-1.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.0
-0.1
+0.6
-0.3
-1.5
stress
R2A with Bacitracin 0.5 mg/ml
+0.1
-0.1
-0.4
-0.2
-0.7
nitrogen source
L-Serine (N)
+0.2
+0.0
-0.3
-0.4
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.5
-0.7
+0.1
+0.4
carbon source
Ethanol (C)
-0.1
+0.1
-0.5
+0.2
-0.6
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.0
+0.0
+0.4
-0.2
-1.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.5
+0.1
+0.4
-0.0
-0.6
stress
R2A with A22 0.01 mg/ml
-0.2
+0.1
-0.8
+0.2
+0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.3
+0.1
-0.9
-0.1
+0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.0
-0.2
+0.5
+0.3
-0.9
carbon source
L-Malic (C)
-0.5
+0.2
+0.4
+0.0
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.1
+1.0
+0.1
-1.5
stress
R2A with Sisomicin 0.035 mg/ml
-0.3
+0.3
-0.2
+0.4
-0.3
carbon source
Disodium Glutarate (C)
+0.1
+0.3
+0.5
+0.2
-0.8
carbon source
D,L-Lactate (C)
-0.1
+0.3
+0.5
-0.3
+0.4
carbon source
succinate (C)
-0.3
+0.4
-0.0
+0.1
+0.7
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.2
+1.2
+0.2
-0.7
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