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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18475 and RR42_RS18480 are separated by 126 nucleotides
RR42_RS18480 and RR42_RS18485 are separated by 130 nucleotides
RR42_RS18485 and RR42_RS18490 are separated by 7 nucleotides
RR42_RS18490 and RR42_RS18495 are separated by 54 nucleotides
RR42_RS18475: RR42_RS18475 - membrane protein, at 4,000,344 to 4,000,670
_RS18475
RR42_RS18480: RR42_RS18480 - SAM-dependent methyltransferase, at 4,000,797 to 4,001,714
_RS18480
RR42_RS18485: RR42_RS18485 - glutaredoxin, at 4,001,845 to 4,002,156
_RS18485
RR42_RS18490: RR42_RS18490 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,002,164 to 4,002,772
_RS18490
RR42_RS18495: RR42_RS18495 - hypothetical protein, at 4,002,827 to 4,003,054
_RS18495
Group
Condition
RR42
_RS18475
RR42
_RS18480
RR42
_RS18485
RR42
_RS18490
RR42
_RS18495
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-2.0
N.D.
-3.2
N.D.
+0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-0.2
N.D.
-4.2
N.D.
+0.0
carbon source
L-Tryptophan (C)
-0.1
N.D.
-4.2
N.D.
-0.0
nitrogen source
L-Serine (N)
-0.2
N.D.
-3.6
N.D.
-0.4
stress
R2A with Lomefloxacin 0.001 mM
-0.3
N.D.
-3.4
N.D.
+0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
N.D.
-3.5
N.D.
+0.2
carbon source
L-Lactate (C)
-0.5
N.D.
-2.5
N.D.
+0.2
carbon source
L-Histidine (C)
-0.2
N.D.
-2.1
N.D.
-0.2
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
N.D.
-2.8
N.D.
+0.2
carbon source
D,L-Lactate (C)
-0.6
N.D.
-1.8
N.D.
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-1.3
N.D.
-0.3
N.D.
-0.4
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.7
N.D.
-1.1
N.D.
-0.1
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.0
N.D.
-1.9
N.D.
-0.0
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
N.D.
-1.7
N.D.
-0.1
carbon source
L-Asparagine (C)
+0.2
N.D.
-2.0
N.D.
+0.0
nitrogen source
D-Alanine (N)
+0.1
N.D.
-1.9
N.D.
-0.0
carbon source
L-Glutamine (C)
+0.2
N.D.
-2.0
N.D.
-0.0
carbon source
Suberic (C)
+0.6
N.D.
-2.1
N.D.
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
N.D.
-1.4
N.D.
+0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.6
N.D.
-1.4
N.D.
-0.4
carbon source
Heptanoic (C)
+0.5
N.D.
-1.7
N.D.
-0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
+0.5
N.D.
-1.7
N.D.
+0.3
carbon source
Hexanoic (C)
+0.7
N.D.
-1.5
N.D.
+0.0
carbon source
Octanoic (C)
+1.0
N.D.
-1.5
N.D.
-0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+1.2
N.D.
-1.1
N.D.
-0.2
lb
LB
+1.0
N.D.
-1.1
N.D.
+0.4
carbon source
adipate (C)
+1.1
N.D.
-0.7
N.D.
+0.1
stress
R2A with sodium fluoride 100 mM
-1.0
N.D.
+1.4
N.D.
+0.2
carbon source
Protocatechuic Acid (C)
+1.4
N.D.
-0.4
N.D.
+0.1
carbon source
Azelaic (C)
+0.8
N.D.
+1.7
N.D.
-0.1
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