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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS18440 and RR42_RS18445 overlap by 4 nucleotides
RR42_RS18445 and RR42_RS18450 overlap by 4 nucleotides
RR42_RS18450 and RR42_RS18455 are separated by 157 nucleotides
RR42_RS18455 and RR42_RS18460 are separated by 68 nucleotides
RR42_RS18440: RR42_RS18440 - hypothetical protein, at 3,993,432 to 3,993,932
_RS18440
RR42_RS18445: RR42_RS18445 - hypothetical protein, at 3,993,929 to 3,995,050
_RS18445
RR42_RS18450: RR42_RS18450 - hypothetical protein, at 3,995,047 to 3,996,102
_RS18450
RR42_RS18455: RR42_RS18455 - S-adenosylhomocysteine nucleosidase, at 3,996,260 to 3,997,027
_RS18455
RR42_RS18460: RR42_RS18460 - membrane protein, at 3,997,096 to 3,997,332
_RS18460
Group
Condition
RR42
_RS18440
RR42
_RS18445
RR42
_RS18450
RR42
_RS18455
RR42
_RS18460
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.8
-0.6
+0.4
+0.1
N.D.
carbon source
Valeric (C)
-0.1
+0.1
-0.3
-0.4
N.D.
carbon source
Heptanoic (C)
-0.3
-0.2
-0.3
+0.1
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-0.0
-0.8
+0.2
N.D.
nitrogen source
L-Leucine (N)
+0.3
-0.1
-0.2
-0.4
N.D.
nitrogen source
Glucuronamide (N)
+0.3
-0.3
-0.0
-0.3
N.D.
carbon source
L-Proline (C)
+0.2
-0.2
+0.1
-0.4
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.2
+0.1
+0.3
N.D.
carbon source
L-Tryptophan (C)
+0.3
-0.2
+0.1
-0.4
N.D.
carbon source
adipate (C)
+0.4
+0.1
-0.4
-0.3
N.D.
nitrogen source
L-Glutamine (N)
+0.2
-0.0
-0.4
+0.2
N.D.
carbon source
Azelaic (C)
+0.3
+0.1
-0.5
+0.2
N.D.
carbon source
Protocatechuic Acid (C)
+0.6
-0.0
-0.0
-0.3
N.D.
carbon source
L-Leucine (C)
+0.3
+0.1
+0.2
-0.3
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.3
+0.3
+0.5
-0.2
N.D.
carbon source
Protocatechuic Acid (C)
+0.6
+0.1
-0.3
-0.1
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.2
+0.3
+0.3
N.D.
carbon source
L-Glutamine (C)
+0.3
+0.1
+0.2
-0.2
N.D.
carbon source
Heptanoic (C)
+0.3
+0.0
-0.2
+0.4
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.1
+0.4
-0.1
N.D.
carbon source
pyruvate (C)
+0.3
+0.2
+0.3
-0.0
N.D.
nitrogen source
Glycine (N)
+0.3
-0.1
+0.2
+0.3
N.D.
lb
LB
+0.2
-0.2
-0.3
+1.2
N.D.
nitrogen source
L-Valine (N)
+0.3
-0.0
+0.3
+0.3
N.D.
stress
R2A with Nickel (II) chloride 0.25 mM
+0.6
+0.2
+0.2
-0.1
N.D.
carbon source
D,L-Lactate (C)
+0.1
+0.2
+0.3
+0.3
N.D.
carbon source
adipate (C)
+0.1
+0.1
+0.0
+0.7
N.D.
carbon source
Ethanol (C)
+0.4
+0.1
+0.3
+0.2
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.3
+0.3
+0.9
N.D.
stress
R2A with Cobalt chloride 0.3 mM
+0.4
+0.1
+0.5
+0.1
N.D.
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